Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsP   Type   Machinery gene
Locus tag   K8O90_RS09010 Genome accession   NZ_CP082881
Coordinates   1474602..1475198 (+) Length   198 a.a.
NCBI ID   WP_002779314.1    Uniprot ID   A0A0Q2JMT7
Organism   Campylobacter coli strain FDAARGOS_1465     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1469602..1480198
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K8O90_RS09000 (K8O90_08935) ctsR 1472902..1473213 (+) 312 WP_002779316.1 hypothetical protein Machinery gene
  K8O90_RS09005 (K8O90_08940) ctsD 1473191..1474609 (+) 1419 WP_002779315.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  K8O90_RS09010 (K8O90_08945) ctsP 1474602..1475198 (+) 597 WP_002779314.1 ATP-binding protein Machinery gene
  K8O90_RS09015 (K8O90_08950) - 1475195..1475791 (+) 597 WP_002779313.1 CDC27 family protein -
  K8O90_RS09020 (K8O90_08955) ctsE 1475784..1477346 (+) 1563 WP_002779312.1 GspE/PulE family protein Machinery gene
  K8O90_RS09025 (K8O90_08960) ctsF 1477333..1478508 (+) 1176 WP_002781160.1 type II secretion system F family protein Machinery gene
  K8O90_RS09030 (K8O90_08965) - 1478505..1479269 (-) 765 WP_002781157.1 TSUP family transporter -
  K8O90_RS09035 (K8O90_08970) - 1479272..1480036 (-) 765 WP_002781156.1 TIGR02757 family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 23633.42 Da        Isoelectric Point: 9.1569

>NTDB_id=603317 K8O90_RS09010 WP_002779314.1 1474602..1475198(+) (ctsP) [Campylobacter coli strain FDAARGOS_1465]
MNNIIAFRQECFDQINALLKNKALILLWGKSGSGKSVLLQRLALYHNEDFTNEIFTDEKDFHHFIQDKKRKIIILDEVGM
YSPNVLELIRIYSDEMSFVLSSHKKINLFEEEYFKSRFSAIFWLQKPDINELSNYIKMKFNQDFPQKSLKFLMKIYQGNL
RYLDKILQSFCELNTYLNNKKSQDYILRLSALEQGFLK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=603317 K8O90_RS09010 WP_002779314.1 1474602..1475198(+) (ctsP) [Campylobacter coli strain FDAARGOS_1465]
ATGAATAATATAATTGCTTTTAGACAAGAATGTTTTGATCAAATCAATGCCTTATTAAAAAATAAAGCTTTGATTTTACT
TTGGGGTAAAAGCGGTAGTGGGAAAAGTGTTTTATTGCAAAGACTTGCGCTATATCATAATGAAGATTTTACCAATGAAA
TTTTTACAGATGAAAAAGATTTTCATCATTTTATACAAGATAAAAAACGAAAAATTATCATACTAGATGAAGTGGGGATG
TATAGTCCTAATGTATTAGAACTAATTCGGATTTATAGCGATGAAATGAGTTTTGTGCTTAGCTCGCATAAAAAAATCAA
TCTTTTTGAAGAGGAGTATTTTAAAAGTCGTTTTAGTGCTATTTTTTGGCTTCAAAAACCTGATATAAATGAATTAAGCA
ATTATATCAAAATGAAATTTAATCAAGACTTTCCCCAAAAATCTTTAAAATTTCTTATGAAAATTTATCAAGGAAATTTA
AGGTATTTAGACAAGATACTTCAAAGTTTTTGCGAATTAAACACCTATTTAAACAATAAAAAAAGTCAAGATTATATTTT
AAGACTAAGCGCATTAGAACAGGGATTTTTAAAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Q2JMT7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsP Campylobacter jejuni subsp. jejuni 81-176

57.921

100

0.591