Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsG   Type   Machinery gene
Locus tag   K8P05_RS02140 Genome accession   NZ_CP082874
Coordinates   415240..415755 (-) Length   171 a.a.
NCBI ID   WP_223416970.1    Uniprot ID   -
Organism   Campylobacter coli strain FDAARGOS_1466     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 410240..420755
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K8P05_RS02125 (K8P05_02095) - 410334..412163 (-) 1830 WP_223416967.1 motility associated factor glycosyltransferase family protein -
  K8P05_RS02130 (K8P05_02100) - 412160..413989 (-) 1830 WP_223416968.1 motility associated factor glycosyltransferase family protein -
  K8P05_RS02135 (K8P05_02105) - 413999..415240 (-) 1242 WP_223416969.1 DUF2920 family protein -
  K8P05_RS02140 (K8P05_02110) ctsG 415240..415755 (-) 516 WP_223416970.1 type II secretion system protein Machinery gene
  K8P05_RS02145 (K8P05_02115) tsaD 415759..416766 (-) 1008 WP_072228312.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  K8P05_RS02150 (K8P05_02120) - 416763..418157 (-) 1395 WP_002797421.1 M99 family carboxypeptidase catalytic domain-containing protein -
  K8P05_RS02155 (K8P05_02125) dxr 418154..419230 (-) 1077 WP_002845859.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  K8P05_RS02160 (K8P05_02130) - 419227..419952 (-) 726 WP_002806265.1 phosphatidate cytidylyltransferase -
  K8P05_RS02165 (K8P05_02135) - 419961..420299 (-) 339 WP_002777761.1 hypothetical protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18836.66 Da        Isoelectric Point: 5.7890

>NTDB_id=603284 K8P05_RS02140 WP_223416970.1 415240..415755(-) (ctsG) [Campylobacter coli strain FDAARGOS_1466]
MKRAFTILELVFVIVILGILAAIALPKFSSSRDEAEVSKSLNNLKTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLSN
FNGIKEVNFRVGDEKECLKLVFINKADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
ASKTYLLIGEM

Nucleotide


Download         Length: 516 bp        

>NTDB_id=603284 K8P05_RS02140 WP_223416970.1 415240..415755(-) (ctsG) [Campylobacter coli strain FDAARGOS_1466]
GTGAAAAGAGCTTTTACTATATTAGAACTTGTTTTTGTGATCGTGATTTTAGGAATTTTAGCAGCGATTGCTTTGCCAAA
ATTCAGTTCTAGTAGAGATGAAGCTGAAGTGAGTAAATCCTTAAACAATCTTAAAACTTTAATCAATGATATAAGCATTT
ATACTTTAAAAAATGATCATTTAAGCTCTATAAAAACGATGAGTAATGTAAGCGGGGTTGAAAATGTTGATCTTAGTAAT
TTTAACGGTATAAAAGAAGTAAATTTTCGCGTAGGCGATGAGAAAGAATGCTTAAAACTTGTTTTTATAAATAAAGCTGA
TTTTATACTCATGGGAATTTCAAGCAATGAAGCAAGTAAAAATGCTATCATCAACGCAGCCAATCAAAGCCATGAAGATT
TAGAAAATATAGACTTTACAAGCTCTTCTAGCAATAAAGCTTGTGTGATCTTAAGTAAGAATGAAAATTTTAAAAACCTA
GCAAGTAAAACTTATCTTTTAATAGGGGAAATGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsG Campylobacter jejuni subsp. jejuni 81-176

91.228

100

0.912