Detailed information    

insolico Bioinformatically predicted

Overview

Name   proC   Type   Machinery gene
Locus tag   K8O82_RS03930 Genome accession   NZ_CP082871
Coordinates   839929..840675 (-) Length   248 a.a.
NCBI ID   WP_041570464.1    Uniprot ID   -
Organism   Campylobacter hominis strain FDAARGOS_1467     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 834929..845675
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K8O82_RS03895 (K8O82_03865) - 835216..835458 (-) 243 WP_012108433.1 KH domain-containing protein -
  K8O82_RS03900 (K8O82_03870) rpsP 835461..835688 (-) 228 WP_012108432.1 30S ribosomal protein S16 -
  K8O82_RS03905 (K8O82_03875) ffh 835750..837084 (-) 1335 WP_012108431.1 signal recognition particle protein -
  K8O82_RS03910 (K8O82_03880) hpf 837297..837839 (-) 543 WP_012108430.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  K8O82_RS03915 (K8O82_03885) - 837853..838317 (-) 465 WP_223429426.1 hypothetical protein -
  K8O82_RS03920 (K8O82_03890) - 838293..839228 (-) 936 WP_012108428.1 type II secretion system protein -
  K8O82_RS03925 (K8O82_03895) - 839241..839852 (-) 612 WP_012108427.1 type II secretion system protein -
  K8O82_RS03930 (K8O82_03900) proC 839929..840675 (-) 747 WP_041570464.1 pyrroline-5-carboxylate reductase Machinery gene
  K8O82_RS03935 (K8O82_03905) - 840798..841436 (+) 639 WP_012108425.1 outer membrane protein assembly factor BamD -
  K8O82_RS03940 (K8O82_03910) lon 841446..843824 (+) 2379 WP_012108424.1 endopeptidase La -
  K8O82_RS03945 (K8O82_03915) - 844383..844589 (-) 207 WP_083755242.1 FtsW/RodA/SpoVE family cell cycle protein -
  K8O82_RS03950 (K8O82_03920) - 844594..845283 (-) 690 WP_012108423.1 dUTP diphosphatase -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26782.31 Da        Isoelectric Point: 8.5505

>NTDB_id=603267 K8O82_RS03930 WP_041570464.1 839929..840675(-) (proC) [Campylobacter hominis strain FDAARGOS_1467]
MKIYILGNGAMASAMAYGMKNKYEIIIVGRNSEKLSSLRKAGFKCEIYGEKYDISGKIIILAFKPYALSQMSKILSGKAE
ILISVMAGITLNDLKILKSDISVVCMPNIAAKYGSSTTPYFSDSNDLRIDEILGSFGGCVRLENENDLNAAGVLSGCVPA
YLALVAEALANGGVKEGLKKEISQNLVNKVFESSAKLLENFHPALLKEQVCSPCGTTIKGIFELEKFKVRAAFMDAVEAS
CSKNSTKF

Nucleotide


Download         Length: 747 bp        

>NTDB_id=603267 K8O82_RS03930 WP_041570464.1 839929..840675(-) (proC) [Campylobacter hominis strain FDAARGOS_1467]
ATGAAAATTTATATACTTGGAAACGGCGCAATGGCGAGCGCTATGGCATATGGAATGAAAAATAAATATGAAATAATAAT
TGTCGGCAGAAATTCAGAAAAACTTTCATCTTTACGCAAAGCCGGTTTTAAATGCGAAATTTACGGAGAAAAATATGATA
TAAGCGGCAAAATTATAATTTTAGCTTTTAAGCCTTATGCTCTTAGTCAAATGAGTAAAATTTTAAGCGGAAAAGCTGAA
ATTTTAATAAGCGTAATGGCTGGAATAACTTTAAATGATTTAAAAATTTTAAAATCTGATATAAGTGTTGTTTGTATGCC
GAATATCGCTGCTAAATACGGCTCTTCAACAACACCTTATTTTTCAGATTCCAATGATTTGCGAATTGATGAAATTTTAG
GAAGTTTCGGCGGTTGCGTCAGGCTTGAAAATGAAAATGATTTAAACGCGGCAGGCGTGCTTTCAGGTTGCGTTCCTGCA
TATTTGGCGCTTGTAGCGGAAGCTCTTGCTAATGGCGGCGTAAAAGAAGGACTTAAAAAAGAAATTTCTCAAAATTTGGT
AAATAAAGTTTTTGAAAGTTCGGCAAAACTTTTGGAAAATTTTCATCCGGCACTCTTAAAAGAGCAGGTTTGTTCTCCTT
GCGGAACTACGATTAAAGGGATTTTCGAGCTTGAAAAATTTAAAGTAAGAGCTGCTTTTATGGACGCTGTTGAAGCAAGC
TGTTCTAAAAATAGCACAAAATTTTAA

Domains

Predicted by InterproScan.

Pyrroline-5-carboxylate reductase dimerisation (P5CR_dimer)

(145-244)

NADP oxidoreductase coenzyme F420-dependent (F420_oxidored)

(2-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  proC Campylobacter jejuni subsp. jejuni 81-176

51.44

97.984

0.504