Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   K8O83_RS09500 Genome accession   NZ_CP082857
Coordinates   1844954..1845637 (-) Length   227 a.a.
NCBI ID   WP_032826264.1    Uniprot ID   -
Organism   Haemophilus aegyptius strain FDAARGOS_1478     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1839954..1850637
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K8O83_RS09485 (K8O83_09375) nrdR 1840744..1841193 (-) 450 WP_005648026.1 transcriptional regulator NrdR -
  K8O83_RS09490 (K8O83_09380) recC 1841248..1844628 (-) 3381 WP_006995602.1 exodeoxyribonuclease V subunit gamma -
  K8O83_RS09495 (K8O83_09385) comQ 1844674..1844961 (-) 288 WP_006995601.1 DUF5374 domain-containing protein Machinery gene
  K8O83_RS09500 (K8O83_09390) comP 1844954..1845637 (-) 684 WP_032826264.1 DUF2572 family protein Machinery gene
  K8O83_RS09505 (K8O83_09395) comO 1845652..1846368 (-) 717 WP_032826301.1 type II secretion system protein J Machinery gene
  K8O83_RS09510 (K8O83_09400) comN 1846362..1846880 (-) 519 WP_032826263.1 type II secretion system protein Machinery gene
  K8O83_RS09515 (K8O83_09405) suhB 1847080..1847883 (+) 804 WP_006995597.1 inositol-1-monophosphatase -
  K8O83_RS09520 (K8O83_09410) nrfE 1847992..1849899 (+) 1908 WP_006995596.1 heme lyase NrfEFG subunit NrfE -
  K8O83_RS09525 (K8O83_09415) - 1849899..1850429 (+) 531 WP_006995595.1 DsbE family thiol:disulfide interchange protein -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 25508.34 Da        Isoelectric Point: 8.4287

>NTDB_id=603134 K8O83_RS09500 WP_032826264.1 1844954..1845637(-) (comP) [Haemophilus aegyptius strain FDAARGOS_1478]
MTIQKGIITLTILIFISGLLTVILLLDDSHLSFFRAQQNQRKHYVERTLQLQNMTEEKKQTACIDLPLNNNESVKQISIA
LEGAADAIQYFLWCERMSLFKKSPKKGDNQGALKDFVSGEKLAYFRPHFSSPPRILNANKMPKLYWFSDSQAEVEINGTV
YAVLIAEGDLKLTGKGRISGAVITSGNLTLDGVTLAYGKKTVVALVQQYSQWQLAEKSWSDFNVQDE

Nucleotide


Download         Length: 684 bp        

>NTDB_id=603134 K8O83_RS09500 WP_032826264.1 1844954..1845637(-) (comP) [Haemophilus aegyptius strain FDAARGOS_1478]
ATGACAATACAAAAAGGCATTATCACGCTGACTATTCTGATTTTTATTTCAGGTTTATTAACCGTAATCTTATTGTTGGA
TGACAGCCATTTAAGTTTTTTTCGTGCGCAACAAAATCAACGAAAACACTATGTGGAAAGAACATTACAACTGCAAAACA
TGACAGAGGAGAAAAAACAAACTGCCTGTATTGATTTACCCTTAAATAATAATGAAAGTGTGAAGCAAATCAGCATCGCC
CTTGAGGGTGCCGCCGATGCAATTCAATATTTTCTTTGGTGTGAAAGAATGAGCCTATTTAAAAAATCGCCTAAAAAGGG
AGATAATCAAGGTGCATTGAAAGATTTTGTGAGTGGCGAAAAACTTGCCTATTTTCGACCGCACTTTTCTTCCCCGCCCA
GAATTTTAAACGCGAATAAAATGCCTAAACTTTATTGGTTTTCAGATTCACAAGCAGAGGTTGAAATTAATGGCACCGTA
TATGCCGTATTAATTGCAGAGGGCGATTTAAAATTGACTGGCAAAGGGAGGATTAGTGGTGCAGTGATTACCAGCGGGAA
TTTAACTTTAGATGGCGTAACTTTAGCTTATGGGAAAAAGACGGTGGTTGCTTTAGTGCAACAATATAGTCAGTGGCAGT
TAGCAGAAAAAAGTTGGAGTGATTTTAATGTTCAGGATGAATAA

Domains

Predicted by InterproScan.

Protein of unknown function (DUF2572) (DUF2572)

(5-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Haemophilus influenzae Rd KW20

95.154

100

0.952