Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   NHZ69_RS26010 Genome accession   NZ_CP099797
Coordinates   5631450..5631974 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain PAO1-N     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5626450..5636974
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NHZ69_RS25995 (NHZ69_25995) aroB 5627566..5628672 (-) 1107 WP_003114574.1 3-dehydroquinate synthase -
  NHZ69_RS26000 (NHZ69_26000) aroK 5628722..5629240 (-) 519 WP_003095833.1 shikimate kinase AroK -
  NHZ69_RS26005 (NHZ69_26005) pilQ 5629252..5631396 (-) 2145 WP_003114575.1 type 4a pilus secretin PilQ Machinery gene
  NHZ69_RS26010 (NHZ69_26010) comL/pilP 5631450..5631974 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  NHZ69_RS26015 (NHZ69_26015) pilO 5631971..5632594 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  NHZ69_RS26020 (NHZ69_26020) pilN 5632591..5633187 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  NHZ69_RS26025 (NHZ69_26025) pilM 5633187..5634251 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  NHZ69_RS26030 (NHZ69_26030) - 5634436..5636904 (+) 2469 WP_003114576.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=602879 NHZ69_RS26010 WP_003095836.1 5631450..5631974(-) (comL/pilP) [Pseudomonas aeruginosa strain PAO1-N]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=602879 NHZ69_RS26010 WP_003095836.1 5631450..5631974(-) (comL/pilP) [Pseudomonas aeruginosa strain PAO1-N]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGGCCCAAGGGCACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362