Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   K7399_RS07415 Genome accession   NZ_CP082837
Coordinates   1554238..1556595 (-) Length   785 a.a.
NCBI ID   WP_128166790.1    Uniprot ID   -
Organism   Sporolactobacillus terrae strain EFEL7003     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1549238..1561595
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K7399_RS07395 (K7399_07375) - 1549420..1549686 (-) 267 WP_010024681.1 IreB family regulatory phosphoprotein -
  K7399_RS07400 (K7399_07380) alaS 1549725..1552367 (-) 2643 WP_128166788.1 alanine--tRNA ligase -
  K7399_RS07405 (K7399_07385) - 1552687..1553751 (-) 1065 WP_223362568.1 AI-2E family transporter -
  K7399_RS07410 (K7399_07390) - 1553823..1554020 (-) 198 WP_028976729.1 hypothetical protein -
  K7399_RS07415 (K7399_07395) recD2 1554238..1556595 (-) 2358 WP_128166790.1 ATP-dependent RecD-like DNA helicase Machinery gene
  K7399_RS07420 (K7399_07400) - 1556615..1557283 (-) 669 WP_028976727.1 tetratricopeptide repeat protein -
  K7399_RS07425 (K7399_07405) mnmA 1557490..1558584 (-) 1095 WP_051575070.1 tRNA 2-thiouridine(34) synthase MnmA -
  K7399_RS07430 (K7399_07410) - 1558623..1559789 (-) 1167 WP_028976725.1 cysteine desulfurase family protein -
  K7399_RS07435 (K7399_07415) cymR 1559842..1560264 (-) 423 WP_010025435.1 cysteine metabolism transcriptional regulator CymR -

Sequence

Protein


Download         Length: 785 a.a.        Molecular weight: 87914.65 Da        Isoelectric Point: 4.6160

>NTDB_id=602827 K7399_RS07415 WP_128166790.1 1554238..1556595(-) (recD2) [Sporolactobacillus terrae strain EFEL7003]
MEQTTMDLFSDQTNSVKGEPIRIVFQNSDNGYTVMIVRINETTEPINEKEITMVGFFPTIHLYETYQFAGKLKTHPRYGQ
QYEVETYRKMLPKSKSGVISYLSGDLFPGIGKKTAEMIVGELGEHAISDILNDPSCLERVPKLDKDKRSMIADTLLKNEG
LEKILIGLSDYGFGSQLATKIYQVYGNDSLEVIAENPYQLIQDIEGIGFQRADELAASLGISGNHPERIQAAYLYWLNER
AMNDGHVFMPEQATISEVQKLLSSKESIDEADLIHEIDVLEEDGKLIREDDQLYLPQLYYAEKGIVTGIQKLVEQDAEDE
YSESEFLKALGKVEDKLSMQYAESQQQAIREAIQSPIMILTGGPGTGKTTVIQGIVEVYAELNSCSLDPKDYDEDHPYPV
LLVAPTGRAAKRMKESTGLPAVTIHRLLGWNGGSGYAHDENDPIEGKLLIVDEMSMVDLWLANQLLKSLPDEMKMVIVGD
EDQLPSVGPGQVLSDLIQSDAVPVIRLTAIFRQAQGSSIIELAHEIKEGKAVDVAEPRKDRRFFKCHQNQVIDVICKVAA
GAQKKGYPPRDIQVLAPIYRGNAGIEQINRSLQELFNPKNDQKRELTYGDHIFRVHDKVLQLVNNPDEQVFNGDIGEISA
IFRAKETTDKEDTVIVTFDSSVEVKYLKHDLNQLTLAYCCSIHKAQGSEFPIVILPIVKGYHRMLKRNLIYTAVTRSKDS
LVLCGDVEAFNQAVSSNDVDQRNSNLARKIGERLHLIEESEPQLHPDEPEFDKPTEAENAPIAKD

Nucleotide


Download         Length: 2358 bp        

>NTDB_id=602827 K7399_RS07415 WP_128166790.1 1554238..1556595(-) (recD2) [Sporolactobacillus terrae strain EFEL7003]
ATGGAACAGACCACCATGGATCTTTTTTCAGATCAGACAAATTCAGTAAAGGGTGAGCCGATTCGAATCGTATTCCAGAA
CAGCGATAACGGATACACCGTGATGATTGTGAGAATTAATGAAACCACGGAGCCCATCAACGAAAAAGAGATCACAATGG
TTGGTTTTTTCCCAACGATCCATTTGTACGAAACCTATCAATTTGCCGGCAAGTTGAAGACGCATCCAAGATATGGTCAG
CAATATGAGGTAGAGACCTATCGAAAAATGCTGCCGAAATCGAAGTCCGGGGTAATCAGCTACCTCTCCGGCGATCTTTT
TCCCGGAATAGGGAAAAAAACGGCGGAGATGATCGTTGGCGAACTTGGCGAACACGCGATTTCTGATATTTTAAATGATC
CTTCATGTTTGGAGCGTGTACCGAAGCTCGATAAAGACAAGCGTTCGATGATTGCCGATACGTTGCTTAAAAATGAAGGA
TTGGAGAAAATTCTGATCGGGCTCTCGGACTACGGATTTGGTTCACAGCTGGCGACGAAGATCTATCAAGTATACGGAAA
TGATAGTCTCGAGGTTATCGCGGAGAATCCATACCAGCTGATTCAGGATATCGAGGGTATTGGTTTTCAACGTGCGGATG
AACTTGCCGCATCTCTTGGCATTTCCGGAAACCATCCGGAGCGGATTCAAGCGGCCTATTTGTATTGGTTGAATGAACGG
GCGATGAATGATGGCCATGTTTTCATGCCGGAACAAGCGACAATTTCAGAAGTCCAAAAACTATTATCCTCAAAAGAGAG
CATCGATGAAGCGGATCTCATCCATGAGATTGATGTTCTGGAAGAGGATGGAAAATTGATTCGGGAAGACGATCAGCTTT
ATCTGCCGCAGCTTTACTATGCGGAAAAAGGAATTGTCACCGGCATTCAGAAGCTGGTTGAACAAGATGCAGAGGATGAA
TACTCGGAAAGCGAATTCCTCAAGGCGCTTGGCAAGGTTGAGGATAAGCTGTCGATGCAATATGCTGAGAGTCAGCAGCA
AGCCATCCGTGAAGCGATCCAGTCCCCGATCATGATCTTAACCGGCGGGCCGGGAACGGGAAAGACGACGGTCATTCAAG
GGATTGTAGAAGTCTATGCGGAGCTGAACAGTTGTTCGCTCGATCCGAAAGATTATGATGAGGATCATCCTTATCCTGTG
TTGCTTGTTGCACCAACCGGACGTGCGGCAAAACGGATGAAAGAATCGACAGGACTTCCGGCTGTGACGATCCATCGGTT
GCTCGGATGGAATGGCGGTTCCGGTTATGCGCATGATGAAAACGATCCGATTGAAGGAAAGCTGCTGATCGTCGATGAGA
TGTCAATGGTTGATTTATGGCTCGCCAATCAGCTGCTTAAGTCGTTGCCGGATGAGATGAAGATGGTCATTGTCGGAGAC
GAAGATCAGCTGCCTTCCGTTGGTCCCGGGCAGGTACTGAGCGATTTGATTCAATCCGACGCCGTTCCGGTGATCCGATT
AACCGCTATTTTCCGTCAGGCGCAAGGCTCATCAATTATCGAACTTGCTCATGAAATCAAAGAGGGTAAAGCTGTCGATG
TCGCAGAGCCGCGAAAGGATCGCCGTTTCTTCAAATGCCATCAGAACCAAGTGATTGATGTCATCTGCAAGGTCGCTGCC
GGCGCACAAAAAAAGGGCTATCCGCCGAGGGACATTCAAGTGCTTGCGCCGATTTACCGTGGCAATGCCGGTATCGAACA
GATTAATCGCTCCCTTCAAGAACTCTTTAATCCGAAAAATGACCAGAAACGTGAGCTGACGTACGGAGATCATATCTTCC
GTGTTCATGATAAGGTATTGCAGTTGGTGAACAATCCTGATGAGCAAGTATTTAACGGTGACATTGGTGAGATATCCGCT
ATTTTTCGTGCAAAGGAGACGACAGATAAGGAAGATACGGTGATCGTCACTTTTGATTCGTCGGTTGAAGTCAAATACCT
CAAGCATGATCTGAATCAGCTGACACTCGCGTACTGCTGCTCAATTCATAAGGCGCAAGGCAGCGAATTTCCAATTGTCA
TCCTGCCAATTGTTAAGGGGTATCACCGCATGCTGAAAAGGAATCTGATTTACACGGCGGTGACCCGGAGCAAGGATTCT
CTCGTTCTATGCGGCGATGTTGAGGCATTTAATCAAGCGGTAAGCAGTAATGACGTGGATCAGCGCAACTCTAATCTTGC
GCGAAAAATAGGCGAACGGCTGCATCTGATTGAGGAATCGGAACCTCAGTTGCATCCTGATGAGCCGGAGTTTGATAAGC
CAACCGAAGCAGAAAACGCTCCCATCGCAAAGGATTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(341-548)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(588-658)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(677-724)

Helix-hairpin-helix containing domain (HHH_RecD2)

(157-248)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

51.609

98.981

0.511