Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   K7G42_RS04465 Genome accession   NZ_CP082783
Coordinates   805554..806423 (+) Length   289 a.a.
NCBI ID   WP_004234319.1    Uniprot ID   -
Organism   Streptococcus parauberis strain KRS02083     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 800554..811423
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K7G42_RS04435 (K7G42_04395) - 800803..801681 (+) 879 WP_003105640.1 F0F1 ATP synthase subunit gamma -
  K7G42_RS04440 (K7G42_04400) atpD 801798..803204 (+) 1407 WP_004234323.1 F0F1 ATP synthase subunit beta -
  K7G42_RS04445 (K7G42_04405) - 803217..803633 (+) 417 WP_003103020.1 F0F1 ATP synthase subunit epsilon -
  K7G42_RS04450 (K7G42_04410) - 803759..803995 (+) 237 WP_003105566.1 DUF1146 family protein -
  K7G42_RS04455 (K7G42_04415) murA 804060..805331 (+) 1272 WP_004234322.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  K7G42_RS04460 (K7G42_04420) - 805335..805523 (+) 189 WP_004234321.1 DNA-directed RNA polymerase subunit beta -
  K7G42_RS04465 (K7G42_04425) endA 805554..806423 (+) 870 WP_004234319.1 DNA/RNA non-specific endonuclease Machinery gene
  K7G42_RS04470 (K7G42_04430) pheS 806699..807742 (+) 1044 WP_003106509.1 phenylalanine--tRNA ligase subunit alpha -
  K7G42_RS04475 (K7G42_04435) - 807828..808352 (+) 525 WP_004234315.1 N-acetyltransferase -
  K7G42_RS04480 (K7G42_04440) pheT 808367..810772 (+) 2406 WP_003106512.1 phenylalanine--tRNA ligase subunit beta -
  K7G42_RS04485 (K7G42_04445) - 810949..811194 (+) 246 WP_238570159.1 PfkB family carbohydrate kinase -

Sequence

Protein


Download         Length: 289 a.a.        Molecular weight: 31932.66 Da        Isoelectric Point: 9.8666

>NTDB_id=602205 K7G42_RS04465 WP_004234319.1 805554..806423(+) (endA) [Streptococcus parauberis strain KRS02083]
MSNHNSKNWKNIGSLILLIFVLAGSYLSKNNVISDNNPIKQIYQSVTGESDGKPFTKDNNNPETPSKAQALTVMTSHVKN
QLVGKITWNGAGAFIINNNKTNLNAKVSSAPYANNQIKYVQGRKVPLVANALLAKSTRQYQNRNETGNGYTNWKPAGWHQ
LHGLLGEYDHAVDRGHLLGYAIVGGLKGFDASTSNPSNIATQLSWANQAADEDSTGQNYYETLIRHALDQNKRVRYRVTL
VYEGNNILSKGSHLEAKSDDGSLEFNVFIPNIQKGIKVNYQTGQVDIER

Nucleotide


Download         Length: 870 bp        

>NTDB_id=602205 K7G42_RS04465 WP_004234319.1 805554..806423(+) (endA) [Streptococcus parauberis strain KRS02083]
ATGTCAAATCACAATTCCAAAAATTGGAAAAATATAGGTAGTCTTATCTTGCTAATTTTCGTTCTAGCAGGTTCCTATCT
AAGTAAGAACAATGTCATTTCGGATAATAATCCGATTAAACAAATCTATCAATCAGTAACCGGTGAAAGTGATGGAAAGC
CTTTTACCAAGGATAATAATAACCCTGAAACGCCAAGTAAAGCTCAAGCATTGACGGTAATGACTAGTCATGTTAAAAAT
CAATTAGTTGGTAAAATTACATGGAACGGTGCGGGTGCTTTTATTATCAATAATAACAAAACAAATTTAAATGCTAAGGT
GTCTAGTGCCCCTTATGCTAATAATCAAATTAAATATGTACAAGGTCGAAAAGTGCCACTTGTCGCAAATGCCTTATTAG
CAAAGTCAACAAGACAATATCAAAATCGTAATGAAACAGGTAATGGTTACACCAATTGGAAACCTGCCGGATGGCATCAG
TTACATGGTTTGTTGGGGGAATATGACCATGCGGTGGACAGAGGTCACCTGTTAGGCTATGCCATAGTTGGTGGACTTAA
GGGGTTTGATGCCTCAACGAGTAACCCAAGCAACATAGCAACGCAATTATCATGGGCTAATCAAGCAGCAGATGAAGATT
CAACTGGTCAAAACTATTATGAGACGCTAATACGACATGCACTTGATCAAAATAAGCGTGTGCGCTATCGTGTAACTTTA
GTTTATGAAGGGAACAATATTTTATCTAAAGGAAGTCATTTGGAAGCAAAATCTGATGATGGAAGCTTAGAATTTAATGT
GTTCATTCCAAATATTCAAAAAGGAATAAAAGTCAATTATCAGACTGGTCAGGTCGATATAGAACGCTAG

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(92-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

64.159

78.201

0.502
  endA Streptococcus pneumoniae D39

64.159

78.201

0.502
  endA Streptococcus pneumoniae R6

64.159

78.201

0.502
  endA Streptococcus pneumoniae TIGR4

64.159

78.201

0.502