Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   K6959_RS11635 Genome accession   NZ_CP082780
Coordinates   2394095..2396500 (-) Length   801 a.a.
NCBI ID   WP_223086569.1    Uniprot ID   -
Organism   Bacillus aquiflavi strain 3H-10     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2389095..2401500
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6959_RS11585 (K6959_11585) - 2389322..2389567 (-) 246 WP_223086559.1 hypothetical protein -
  K6959_RS11590 (K6959_11590) - 2389572..2390609 (-) 1038 WP_223086561.1 pre-toxin TG domain-containing protein -
  K6959_RS11595 (K6959_11595) - 2390597..2390818 (-) 222 WP_223086563.1 hypothetical protein -
  K6959_RS19195 - 2390993..2391121 (-) 129 WP_262421776.1 hypothetical protein -
  K6959_RS11600 (K6959_11600) - 2391218..2391496 (-) 279 WP_223086564.1 hypothetical protein -
  K6959_RS11605 (K6959_11605) - 2391524..2391895 (-) 372 WP_223086566.1 hypothetical protein -
  K6959_RS11610 (K6959_11610) - 2391937..2392284 (-) 348 WP_223086567.1 DUF4176 domain-containing protein -
  K6959_RS11615 (K6959_11615) - 2392562..2393083 (-) 522 WP_163243210.1 GrpB family protein -
  K6959_RS11620 (K6959_11620) - 2393219..2393353 (-) 135 WP_163243209.1 YrzQ family protein -
  K6959_RS11625 (K6959_11625) - 2393383..2393574 (-) 192 WP_163243208.1 hypothetical protein -
  K6959_RS11630 (K6959_11630) - 2393586..2394062 (-) 477 WP_163243207.1 PRC-barrel domain-containing protein -
  K6959_RS11635 (K6959_11635) recD2 2394095..2396500 (-) 2406 WP_223086569.1 ATP-dependent RecD-like DNA helicase Machinery gene
  K6959_RS11640 (K6959_11640) - 2396525..2397190 (-) 666 WP_163243205.1 tetratricopeptide repeat protein -
  K6959_RS11645 (K6959_11645) mnmA 2397299..2398414 (-) 1116 WP_223086571.1 tRNA 2-thiouridine(34) synthase MnmA -
  K6959_RS11650 (K6959_11650) - 2398420..2399562 (-) 1143 WP_223086573.1 cysteine desulfurase family protein -
  K6959_RS11655 (K6959_11655) cymR 2399632..2400057 (-) 426 WP_163243202.1 cysteine metabolism transcriptional regulator CymR -
  K6959_RS11660 (K6959_11660) - 2400054..2400752 (-) 699 WP_223086574.1 YitT family protein -

Sequence

Protein


Download         Length: 801 a.a.        Molecular weight: 91108.39 Da        Isoelectric Point: 5.6949

>NTDB_id=602148 K6959_RS11635 WP_223086569.1 2394095..2396500(-) (recD2) [Bacillus aquiflavi strain 3H-10]
MEKQSSLHLFEEQKKNIKGRHLVTIFHNEQNLYTVLRIRVEETNLAYAEKEAVITGYFPVVHEQETYFFYGDLTEHPKFG
TQFQASHYKKDIPQTKQGVINYLSSELFQGIGKKTAENIVSALGENAISRILNEPSLLDGVPKLSPDKAKSLYDKLRDHQ
GLEQIMIALNQYGFGPQLSIRIYQMYKENTLEIIQRNPYKLVEDIEGIGFGRADELGHQLGISGNHPDRIKAGCLYTLET
ECMQEGHVYVEAKELLEKVKTLLEENKRDMIEYTDISNELIKLGEEGKLIIEETRVYLPSLYFSEKGFVTNIKRILTQTE
YNEQFPESEFLLALGKLEERLNVQYAPSQKEAIQTALMSPMMILTGGPGTGKTTVIKGIVELYSELHGCSLNPKDYKKDE
LYPFLLAAPTGRAAKRMSESTGLPAVTIHRLLGWNGTDGFTYDDNNHLEGKIIIIDETSMIDIWLVHQLFKALPNQIQVI
LVGDEDQLPSVGPGQVLKDLLRSERIPTVRLTDIYRQAEGSSIIELAHKIKVGKIPETVSAQQVDRSFIKCSAVQIPEVV
KKVALNAKKKGYSSKDIQVLAPMYRGPAGIDRLNALLQEIFNPNDGTRKEIKFGEMKYRIGDKVLQLVNKPENHVFNGDI
GEIVSIFYAKENTEKQDMVIVSYDGVEVTYTKQDLNQITHAFCCSVHKAQGSEFPIVIFPIVKSYYRMLRRNLIYTAITR
SKQFLILCGEEEALRIGVERINDQVRKTTLYERLQDGILEDQGVAVDEKGIYQLSYEERMMNTDPLIGMENVSPYDFMED
R

Nucleotide


Download         Length: 2406 bp        

>NTDB_id=602148 K6959_RS11635 WP_223086569.1 2394095..2396500(-) (recD2) [Bacillus aquiflavi strain 3H-10]
ATGGAAAAGCAAAGCTCACTTCATTTGTTTGAAGAACAAAAAAAAAATATAAAGGGGCGCCATCTTGTCACGATTTTTCA
TAATGAGCAAAATTTATATACTGTATTGCGAATCCGTGTAGAAGAAACAAATCTTGCTTATGCTGAAAAAGAGGCGGTTA
TTACCGGTTATTTTCCCGTTGTTCATGAGCAAGAAACGTATTTTTTTTATGGGGATTTAACAGAACATCCGAAATTCGGG
ACGCAATTTCAAGCAAGTCATTACAAAAAAGATATTCCGCAAACAAAACAAGGAGTTATTAATTATTTGTCGAGTGAGCT
TTTTCAAGGAATTGGGAAAAAAACGGCTGAAAATATCGTAAGTGCATTAGGTGAAAATGCGATTAGCCGTATTTTAAATG
AACCATCTCTTCTAGATGGAGTACCGAAGCTGTCTCCAGATAAAGCAAAAAGTTTATATGATAAGTTAAGAGACCATCAA
GGGTTAGAACAAATCATGATTGCTTTAAATCAATATGGATTCGGTCCGCAGCTTTCCATTCGTATTTATCAAATGTATAA
AGAAAATACGTTAGAGATCATTCAAAGAAATCCTTATAAACTTGTTGAAGATATTGAAGGGATTGGTTTTGGACGGGCAG
ATGAATTAGGGCATCAGCTTGGAATTAGCGGAAATCATCCTGATCGGATAAAAGCCGGTTGTTTGTATACACTTGAAACA
GAATGTATGCAAGAAGGTCATGTTTATGTTGAGGCGAAAGAGTTACTTGAAAAAGTAAAAACTCTTCTCGAAGAAAATAA
GCGAGATATGATCGAATATACAGATATATCAAATGAACTCATTAAGCTTGGAGAAGAAGGAAAGCTTATTATAGAAGAGA
CAAGAGTTTACTTACCATCCCTTTATTTTTCTGAGAAAGGATTTGTAACGAATATTAAGCGAATTCTTACTCAAACTGAA
TATAACGAACAATTTCCTGAATCAGAATTTTTACTTGCTCTAGGAAAGTTAGAAGAAAGATTAAATGTGCAATATGCTCC
GTCACAAAAAGAAGCAATTCAAACAGCTTTAATGTCGCCAATGATGATTTTAACTGGGGGACCCGGTACCGGGAAGACAA
CGGTTATTAAGGGGATTGTTGAGCTATATAGTGAATTGCACGGATGCTCCCTAAACCCTAAAGATTATAAAAAAGATGAA
CTCTATCCATTCTTACTAGCTGCCCCTACAGGACGAGCTGCAAAACGAATGAGTGAATCAACAGGGCTTCCAGCAGTAAC
AATTCATCGTTTGCTCGGTTGGAATGGAACAGATGGTTTTACGTATGATGATAACAACCATCTTGAAGGAAAAATTATTA
TTATTGATGAAACTTCAATGATAGATATTTGGCTTGTACATCAACTGTTTAAAGCATTACCTAATCAAATTCAAGTAATT
CTTGTTGGAGATGAAGATCAGCTCCCATCAGTAGGACCAGGACAAGTCTTAAAAGATCTTCTCCGTTCCGAACGTATTCC
AACTGTGCGGTTAACAGATATATATCGTCAAGCAGAAGGATCTTCAATTATTGAGCTCGCTCATAAAATAAAAGTCGGTA
AAATTCCTGAAACGGTTTCCGCTCAACAAGTTGATCGTTCCTTTATAAAATGTTCAGCGGTACAAATTCCTGAGGTAGTT
AAAAAAGTTGCATTAAATGCTAAGAAAAAAGGGTACAGTTCAAAGGATATTCAAGTATTAGCGCCAATGTATCGGGGACC
GGCTGGGATAGACCGCCTAAACGCCTTGTTACAAGAAATCTTTAATCCAAATGATGGAACCCGAAAAGAAATAAAATTTG
GTGAGATGAAATATCGGATTGGCGACAAAGTTCTTCAACTTGTTAACAAACCGGAAAATCATGTTTTTAATGGTGATATT
GGGGAGATTGTTTCGATTTTTTATGCTAAAGAAAATACAGAAAAGCAAGATATGGTAATCGTATCGTATGACGGAGTTGA
AGTGACCTATACAAAGCAAGATTTAAACCAAATTACTCATGCCTTTTGCTGCTCCGTTCATAAAGCTCAAGGAAGTGAGT
TTCCGATTGTCATTTTTCCGATCGTTAAAAGCTATTATCGAATGTTAAGAAGAAATTTAATTTATACTGCGATCACAAGA
AGCAAACAATTTCTCATTTTATGTGGAGAAGAAGAGGCGCTGCGGATTGGTGTAGAGCGAATAAACGATCAAGTTCGAAA
AACAACGCTTTATGAAAGGCTGCAAGATGGAATTTTAGAGGATCAAGGGGTAGCTGTTGATGAAAAAGGCATCTATCAAT
TAAGTTATGAAGAACGAATGATGAATACAGACCCGCTGATCGGAATGGAAAACGTTTCACCTTATGATTTTATGGAGGAT
AGGTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(345-551)

Helix-hairpin-helix containing domain (HHH_RecD2)

(159-249)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(593-661)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(680-728)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

62.547

99.001

0.619