Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   K6959_RS06015 Genome accession   NZ_CP082780
Coordinates   1192045..1192824 (+) Length   259 a.a.
NCBI ID   WP_163240139.1    Uniprot ID   A0A6B3VYZ0
Organism   Bacillus aquiflavi strain 3H-10     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1187045..1197824
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6959_RS05995 (K6959_05995) trmFO 1187692..1188996 (+) 1305 WP_163240130.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  K6959_RS06000 (K6959_06000) xerC 1189059..1189958 (+) 900 WP_223087924.1 tyrosine recombinase XerC -
  K6959_RS06005 (K6959_06005) hslV 1189979..1190524 (+) 546 WP_163240135.1 ATP-dependent protease subunit HslV -
  K6959_RS06010 (K6959_06010) hslU 1190543..1191946 (+) 1404 WP_163240137.1 HslU--HslV peptidase ATPase subunit -
  K6959_RS06015 (K6959_06015) codY 1192045..1192824 (+) 780 WP_163240139.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  K6959_RS06020 (K6959_06020) rpsB 1193218..1193922 (+) 705 WP_163240141.1 30S ribosomal protein S2 -
  K6959_RS06025 (K6959_06025) tsf 1194086..1194967 (+) 882 WP_163240143.1 translation elongation factor Ts -
  K6959_RS06030 (K6959_06030) pyrH 1195130..1195855 (+) 726 WP_163240145.1 UMP kinase -
  K6959_RS06035 (K6959_06035) frr 1195855..1196412 (+) 558 WP_163240146.1 ribosome recycling factor -
  K6959_RS06040 (K6959_06040) - 1196828..1197604 (+) 777 WP_163240148.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29024.46 Da        Isoelectric Point: 5.0201

>NTDB_id=602139 K6959_RS06015 WP_163240139.1 1192045..1192824(+) (codY) [Bacillus aquiflavi strain 3H-10]
MDLLTRTRKINAMLQKAAGKPVNFKEMAETLSDVIEANIFVVSRRGKLLGFAVNQQIENERMKKMLEDRQFPEKYTKNLF
NIQETSPNLDVESEYTAFPVENKDLFKTGLTTIVPINGGGERLGTLILARLTEKFHDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLVELEKLKAN

Nucleotide


Download         Length: 780 bp        

>NTDB_id=602139 K6959_RS06015 WP_163240139.1 1192045..1192824(+) (codY) [Bacillus aquiflavi strain 3H-10]
ATGGACTTATTAACGAGAACAAGAAAAATTAATGCAATGTTACAAAAAGCAGCAGGAAAACCAGTCAATTTTAAAGAAAT
GGCGGAAACATTAAGTGATGTAATTGAAGCTAATATATTTGTCGTTAGCCGCCGCGGAAAGCTATTAGGCTTCGCAGTCA
ATCAGCAGATTGAAAATGAGCGGATGAAAAAGATGCTTGAAGATCGCCAATTTCCTGAAAAATATACAAAAAACTTATTT
AATATTCAAGAGACTTCACCGAACCTTGATGTAGAAAGTGAATATACAGCTTTCCCAGTTGAGAATAAAGACTTATTCAA
GACAGGATTAACAACAATCGTACCTATAAATGGCGGCGGAGAGCGGTTAGGAACATTGATATTGGCACGGTTAACGGAAA
AATTTCATGATGATGATCTTATTTTGGCAGAATATGGGGCTACCGTTGTTGGAATGGAAATATTGCGGGAAAAAGCTGAA
GAAATTGAAGAAGAAGCCAGAAGCAAAGCGGTTGTTCAAATGGCAATTAGCTCTTTATCATATAGTGAGTTAGAGGCAAT
TGAACATATTTTTGAAGAATTGAATGGAAATGAAGGACTGTTAGTTGCTTCGAAGATTGCTGATAGAGTAGGGATTACAC
GTTCTGTTATCGTAAATGCGTTACGAAAACTAGAAAGCGCTGGGGTGATCGAATCTCGTTCACTTGGAATGAAAGGTACT
TATATAAAAGTATTAAATGATAAATTTTTAGTTGAACTTGAAAAATTAAAAGCAAACTAG

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6B3VYZ0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

86.873

100

0.869
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.368

95.367

0.452