Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   JSY00_RS06535 Genome accession   NZ_CP082778
Coordinates   1327566..1328405 (-) Length   279 a.a.
NCBI ID   WP_044678798.1    Uniprot ID   -
Organism   Streptococcus suis strain ID32098     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1322566..1333405
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JSY00_RS06520 (JSY00_06520) uidA 1322926..1324725 (-) 1800 WP_044678794.1 beta-glucuronidase -
  JSY00_RS06525 (JSY00_06525) - 1324741..1325769 (-) 1029 WP_044678796.1 sugar kinase -
  JSY00_RS06530 (JSY00_06530) - 1325826..1327379 (-) 1554 WP_044678797.1 MFS transporter -
  JSY00_RS06535 (JSY00_06535) endA 1327566..1328405 (-) 840 WP_044678798.1 DNA/RNA non-specific endonuclease Machinery gene
  JSY00_RS06540 (JSY00_06540) - 1328435..1328626 (-) 192 WP_012775177.1 DNA-directed RNA polymerase subunit beta -
  JSY00_RS06545 (JSY00_06545) murA 1328619..1329902 (-) 1284 WP_044678799.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  JSY00_RS06550 (JSY00_06550) - 1329926..1330150 (-) 225 WP_024387485.1 DUF1146 family protein -
  JSY00_RS06555 (JSY00_06555) - 1330210..1330626 (-) 417 WP_002936007.1 F0F1 ATP synthase subunit epsilon -
  JSY00_RS06560 (JSY00_06560) atpD 1330636..1332042 (-) 1407 WP_002936008.1 F0F1 ATP synthase subunit beta -
  JSY00_RS06565 (JSY00_06565) - 1332062..1332940 (-) 879 WP_002936012.1 F0F1 ATP synthase subunit gamma -

Sequence

Protein


Download         Length: 279 a.a.        Molecular weight: 30219.41 Da        Isoelectric Point: 6.2370

>NTDB_id=602103 JSY00_RS06535 WP_044678798.1 1327566..1328405(-) (endA) [Streptococcus suis strain ID32098]
MAKKNVRKQAMSLLSLLATIVVVAGGYLLSDNKSSNIADYSYYVNQSKASESTPSQELASSVLTEDVKKQLGNSIEWNGA
GAFIINGNQTDLDASVASVPYGDNKTKTVQGETVPTVANALLAKSTRQYKDREETGNGRTSWTPAGWHQIHDLTGEYDHA
VDRGHLLGYALIGGLSGFDASTSNPKNIAVQTAWSNQANDQTSTGQNYFESQIRRALDKNKRVRYRVTLVYAESEDLVPV
GSHLEAKAADGSLEFNVFIPNVQSGLSINYHSGEIAVNQ

Nucleotide


Download         Length: 840 bp        

>NTDB_id=602103 JSY00_RS06535 WP_044678798.1 1327566..1328405(-) (endA) [Streptococcus suis strain ID32098]
ATGGCGAAGAAAAATGTAAGAAAACAAGCAATGAGTCTGCTCAGCTTATTAGCTACGATTGTTGTAGTAGCGGGTGGCTA
TCTTTTAAGTGATAACAAGAGCAGTAACATTGCTGATTATTCCTATTATGTCAATCAGTCTAAGGCAAGCGAGAGCACAC
CTAGTCAGGAACTGGCTAGTTCGGTATTGACAGAAGATGTAAAAAAGCAACTGGGAAATTCGATTGAATGGAATGGCGCT
GGAGCATTTATTATTAACGGTAATCAAACGGATTTAGATGCATCGGTTGCCAGTGTTCCTTATGGTGATAATAAGACAAA
AACAGTCCAGGGAGAAACGGTTCCAACAGTAGCCAATGCGCTTTTAGCTAAATCTACACGTCAGTATAAGGATCGTGAAG
AAACAGGAAATGGTCGAACTTCTTGGACACCTGCTGGTTGGCATCAAATCCATGATTTAACTGGAGAATATGACCATGCA
GTGGACCGTGGTCACCTCCTAGGTTATGCTTTGATTGGTGGATTGTCTGGCTTCGATGCTTCAACCAGCAATCCTAAGAA
TATTGCAGTTCAAACAGCTTGGTCCAACCAAGCTAACGACCAAACTTCAACTGGGCAGAATTATTTTGAAAGTCAGATTC
GGCGGGCCTTGGATAAAAATAAGCGTGTCCGCTATCGTGTGACCTTGGTGTATGCTGAGAGTGAAGACCTTGTTCCTGTC
GGAAGCCATCTAGAGGCAAAAGCAGCAGATGGTAGCTTAGAGTTCAATGTGTTCATTCCAAATGTGCAGAGCGGTCTCAG
TATCAACTATCATAGTGGGGAAATTGCAGTAAATCAATAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(81-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

69.915

84.588

0.591
  endA Streptococcus pneumoniae D39

69.915

84.588

0.591
  endA Streptococcus pneumoniae R6

69.915

84.588

0.591
  endA Streptococcus pneumoniae TIGR4

69.915

84.588

0.591