Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   HK93_RS01435 Genome accession   NC_021826
Coordinates   273221..274465 (+) Length   414 a.a.
NCBI ID   WP_003731444.1    Uniprot ID   A0A5L2A178
Organism   Listeria monocytogenes     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 268221..279465
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HK93_RS01415 (M643_01445) yfmH 269395..270681 (+) 1287 WP_003727460.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  HK93_RS01420 (M643_01450) ymfI 270773..271504 (+) 732 WP_003731443.1 elongation factor P 5-aminopentanone reductase -
  HK93_RS01425 (M643_01455) - 271555..272484 (+) 930 WP_003727458.1 helix-turn-helix domain-containing protein -
  HK93_RS01430 (M643_01460) pgsA 272575..273153 (+) 579 WP_003723921.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  HK93_RS01435 (M643_01465) cinA 273221..274465 (+) 1245 WP_003731444.1 competence/damage-inducible protein A Machinery gene
  HK93_RS01440 (M643_01470) recA 274738..275784 (+) 1047 WP_003725961.1 recombinase RecA Machinery gene
  HK93_RS01445 (M643_01475) rny 276085..277647 (+) 1563 WP_003721904.1 ribonuclease Y -
  HK93_RS01450 (M643_01480) - 277762..278259 (+) 498 WP_009918755.1 GNAT family N-acetyltransferase -
  HK93_RS01455 (M643_01485) - 278265..279068 (+) 804 WP_003721906.1 TIGR00282 family metallophosphoesterase -
  HK93_RS01460 (M643_01490) - 279085..279447 (+) 363 WP_014929949.1 RicAFT regulatory complex protein RicA family protein -

Sequence

Protein


Download         Length: 414 a.a.        Molecular weight: 45733.97 Da        Isoelectric Point: 4.6592

>NTDB_id=60207 HK93_RS01435 WP_003731444.1 273221..274465(+) (cinA) [Listeria monocytogenes]
MASAEIIAVGTELLLGQIVNSNAAFISQELAADGIYVYHHTVVGDNPTRLKEVIEIAENRSDILIFTGGLGPTEDDITKQ
ILAAHLQKQLVEDEYHMNKINEYFTSRNRTMTENNKLQAVIIEDSIVLNNDFGFAAGMYLRENNHTYVLLPGPPSEMKPM
FTSYANPLLLSESGDQNILESKIMRFFGIGESQLAADLNDLIVTQVNPTIATYAGDNEVVVRITATAKTKEEASRLVKET
EEEILRREGTFLYGYGEVSLSELVTAMLLEKELTISAAESFTAGLFQAEIARFPGISKIFKGGMVTYSEETKQSILQVSP
QVIKEKGVVSAECAKEMAENVIRLCKTDIGISFTGVAGPDSLEGHPAGTIWIGLSVKGYETEAFQFVYGRDRNHNRRRAV
KQGFQLIKQFLDAN

Nucleotide


Download         Length: 1245 bp        

>NTDB_id=60207 HK93_RS01435 WP_003731444.1 273221..274465(+) (cinA) [Listeria monocytogenes]
ATGGCAAGTGCAGAAATCATTGCAGTAGGAACAGAACTATTACTAGGGCAAATTGTTAATTCTAATGCTGCGTTTATTTC
ACAAGAATTAGCTGCTGACGGAATATATGTATATCATCATACGGTAGTTGGAGATAACCCAACACGTTTAAAAGAAGTAA
TCGAAATCGCTGAAAACCGAAGTGACATTTTAATCTTTACCGGCGGACTTGGACCGACTGAGGATGATATTACAAAACAA
ATCTTGGCTGCTCATCTACAAAAGCAATTAGTGGAAGATGAATACCATATGAATAAAATTAATGAGTATTTCACTTCTAG
GAATAGGACTATGACCGAAAATAATAAATTACAAGCGGTTATTATTGAAGATTCCATCGTATTAAATAATGATTTTGGCT
TTGCGGCTGGAATGTACTTAAGAGAAAACAATCATACTTACGTTTTGCTACCAGGTCCACCATCTGAAATGAAACCAATG
TTTACAAGCTATGCTAACCCATTACTTTTAAGCGAAAGTGGCGATCAAAACATTTTAGAATCCAAAATTATGCGCTTTTT
TGGAATTGGAGAGTCACAATTAGCTGCTGATTTAAATGATTTGATTGTCACGCAAGTCAACCCGACGATTGCGACATATG
CTGGTGATAATGAAGTTGTGGTCCGTATCACAGCGACAGCTAAAACAAAAGAAGAAGCAAGCAGACTTGTGAAGGAAACC
GAGGAAGAAATATTGCGCCGAGAAGGTACCTTTTTATATGGATATGGAGAGGTGTCATTGTCTGAATTAGTTACGGCGAT
GTTACTTGAAAAAGAACTTACCATCTCTGCCGCAGAAAGTTTCACTGCTGGTTTGTTCCAAGCAGAAATTGCCCGCTTTC
CTGGCATTTCGAAAATTTTCAAAGGTGGTATGGTGACATACAGTGAAGAAACAAAACAATCTATATTACAAGTATCTCCC
CAAGTAATAAAAGAAAAAGGCGTTGTTAGTGCGGAATGTGCGAAGGAAATGGCTGAAAATGTAATCCGCCTTTGTAAGAC
GGATATTGGAATCAGTTTTACAGGTGTTGCAGGTCCAGATAGTTTAGAAGGTCATCCTGCTGGCACTATTTGGATTGGAC
TAAGCGTTAAAGGTTATGAAACAGAGGCTTTTCAGTTTGTCTATGGAAGAGATCGAAACCATAATCGCCGCCGTGCAGTA
AAACAAGGATTTCAGTTAATTAAACAATTTTTAGACGCAAATTAG

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(259-410)

Probable molybdopterin binding domain (MoCF_biosynth)

(6-169)

Damage-inducible protein CinA KH domain (CinA_KH)

(181-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5L2A178

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

51.589

98.792

0.51
  cinA Streptococcus pneumoniae TIGR4

49.282

100

0.498
  cinA Streptococcus mitis SK321

49.043

100

0.495
  cinA Streptococcus mitis NCTC 12261

48.804

100

0.493
  cinA Streptococcus pneumoniae Rx1

48.565

100

0.49
  cinA Streptococcus pneumoniae R6

48.565

100

0.49
  cinA Streptococcus pneumoniae D39

48.325

100

0.488
  cinA Streptococcus mutans UA159

48.301

99.517

0.481
  cinA Streptococcus suis isolate S10

38.592

99.517

0.384

Multiple sequence alignment