Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   CHBNTHi_RS08395 Genome accession   NZ_AP018781
Coordinates   1671232..1672572 (-) Length   446 a.a.
NCBI ID   WP_065245263.1    Uniprot ID   -
Organism   Haemophilus influenzae strain CHBN-V-1 isolate 13H43     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1666232..1677572
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CHBNTHi_RS08375 (CHBNV1_16000) - 1666578..1668098 (-) 1521 WP_048954502.1 Na+/H+ antiporter NhaC family protein -
  CHBNTHi_RS08380 (CHBNV1_16010) - 1668541..1668945 (+) 405 WP_005647241.1 H-NS family nucleoid-associated regulatory protein -
  CHBNTHi_RS08385 (CHBNV1_16020) purU 1669015..1669851 (+) 837 WP_065245265.1 formyltetrahydrofolate deformylase -
  CHBNTHi_RS08390 (CHBNV1_16030) aroA 1669851..1671149 (+) 1299 WP_065245264.1 3-phosphoshikimate 1-carboxyvinyltransferase -
  CHBNTHi_RS08395 (CHBNV1_16040) rarA 1671232..1672572 (-) 1341 WP_065245263.1 replication-associated recombination protein A Machinery gene
  CHBNTHi_RS08400 (CHBNV1_16050) lolA 1672633..1673250 (-) 618 WP_005664565.1 outer membrane lipoprotein chaperone LolA -
  CHBNTHi_RS08405 (CHBNV1_16060) - 1673268..1676036 (-) 2769 WP_110437547.1 DNA translocase FtsK -
  CHBNTHi_RS08410 (CHBNV1_16070) lrp 1676038..1676517 (-) 480 WP_005664572.1 leucine-responsive transcriptional regulator Lrp -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 50221.11 Da        Isoelectric Point: 6.3312

>NTDB_id=60192 CHBNTHi_RS08395 WP_065245263.1 1671232..1672572(-) (rarA) [Haemophilus influenzae strain CHBN-V-1 isolate 13H43]
MSNLNFDFAENDFRPLAAKMRPTSLEQYFGQSHLIGEGKPLRKAIQAGHIHSMILWGPPGTGKTTLAEIIAQRINAEVER
ISAVTSGIKEIREAIDRAKQNRLADRKTILFVDEVHRFNKSQQDAFLPHIEDGTVIFIGATTENPSFELNNALLSRARVY
VLKSLTTAEIEQVLQQAVEDPERGLGKERLILEENLLQVLAEYVNGDARLALNCLELMVDMADEMENGKKIDRTLLKEVL
GERQARFDKQGDRFYDLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCF
TRVGAYEGERAIAQAIIYLAVAPKSNAVYTAFNTAKQQAKDLPDYDVPPHLRNAPTNLMKELGYGAEYRYAHDEPNAYAA
GENYFPPELKDTQYYFPTNRGMEIQIKEKLERLREQDKSAVKKRYK

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=60192 CHBNTHi_RS08395 WP_065245263.1 1671232..1672572(-) (rarA) [Haemophilus influenzae strain CHBN-V-1 isolate 13H43]
ATGTCTAACCTCAATTTTGATTTTGCCGAAAATGATTTTCGCCCACTGGCGGCCAAGATGCGTCCAACGAGTCTAGAACA
ATATTTTGGGCAAAGCCATTTAATTGGCGAGGGCAAGCCACTGCGAAAAGCTATCCAAGCTGGCCATATTCATTCAATGA
TTTTGTGGGGCCCACCAGGTACGGGGAAAACAACCCTTGCAGAAATCATAGCACAACGTATTAATGCGGAAGTAGAGCGA
ATTTCTGCGGTGACGAGTGGTATCAAAGAAATTCGTGAAGCGATTGATCGTGCAAAACAAAATCGTCTTGCGGATCGTAA
AACTATCTTATTTGTGGATGAAGTCCATCGTTTTAATAAAAGCCAGCAAGATGCATTTTTACCGCACATTGAAGACGGAA
CCGTTATTTTTATTGGGGCGACAACAGAAAATCCCTCTTTTGAGCTAAATAATGCATTGCTTTCTCGTGCCCGCGTGTAT
GTGCTGAAATCACTCACAACGGCTGAAATTGAACAAGTTTTGCAGCAAGCTGTAGAAGATCCTGAACGAGGATTGGGTAA
AGAGCGGTTAATTTTAGAAGAGAATTTACTGCAAGTGCTTGCCGAATATGTTAATGGGGATGCGCGATTAGCCTTGAATT
GCCTCGAATTAATGGTGGATATGGCAGATGAAATGGAAAATGGAAAGAAAATTGACCGCACTTTATTAAAAGAAGTCTTA
GGCGAACGTCAAGCGAGATTTGATAAACAAGGTGATCGTTTCTATGATTTAATTTCTGCGCTACATAAATCTGTTCGAGG
TTCTGCTCCAGACGCTGCACTGTATTGGTATGCAAGAATTTTAACGGCAGGTGGCGATCCTTTATATGTCGCGCGCCGAT
TACTTGCCATTGCTTCAGAAGATGTGGGAAATGCAGATCCTCGTGCTATGCAAGTTGCATTGGCTGCTTGGGATTGCTTT
ACTCGAGTGGGGGCTTATGAAGGAGAGCGAGCCATCGCTCAAGCCATTATATATCTCGCAGTAGCGCCAAAAAGTAATGC
GGTTTATACGGCGTTTAACACCGCGAAACAGCAAGCGAAAGATTTGCCAGATTACGATGTTCCACCACATTTACGCAATG
CGCCGACTAATTTAATGAAAGAGCTTGGCTATGGTGCTGAATATCGTTATGCTCACGATGAACCTAACGCTTATGCGGCA
GGCGAAAATTATTTCCCACCTGAATTAAAAGATACTCAATATTATTTTCCGACAAATAGAGGTATGGAAATTCAGATTAA
GGAAAAACTAGAACGATTACGTGAGCAAGATAAAAGTGCGGTGAAAAAACGGTATAAATAA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(188-266)

MgsA AAA+ ATPase C terminal (MgsA_C)

(267-433)

ATPase family associated with various cellular activities (AAA) (AAA)

(53-159)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

39.243

94.843

0.372

Multiple sequence alignment