Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   K7T73_RS13840 Genome accession   NZ_CP082363
Coordinates   2637913..2640279 (-) Length   788 a.a.
NCBI ID   WP_223661875.1    Uniprot ID   -
Organism   Bacillus badius strain NBPM-293     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2632913..2645279
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K7T73_RS13825 (K7T73_13805) dtd 2634518..2634958 (-) 441 WP_223661874.1 D-aminoacyl-tRNA deacylase -
  K7T73_RS13830 (K7T73_13810) - 2634972..2637167 (-) 2196 WP_063385487.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  K7T73_RS13835 (K7T73_13815) - 2637407..2637922 (-) 516 WP_041097448.1 adenine phosphoribosyltransferase -
  K7T73_RS13840 (K7T73_13820) recJ 2637913..2640279 (-) 2367 WP_223661875.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  K7T73_RS13845 (K7T73_13825) - 2640469..2640798 (-) 330 WP_063385485.1 lipopolysaccharide assembly LapA domain-containing protein -
  K7T73_RS13850 (K7T73_13830) - 2640818..2641726 (-) 909 WP_063385484.1 cation diffusion facilitator family transporter -
  K7T73_RS13855 (K7T73_13835) secDF 2642046..2644310 (-) 2265 WP_063385483.1 protein translocase subunit SecDF -
  K7T73_RS13860 (K7T73_13840) - 2644451..2644765 (-) 315 WP_041097460.1 post-transcriptional regulator -

Sequence

Protein


Download         Length: 788 a.a.        Molecular weight: 88462.26 Da        Isoelectric Point: 4.9488

>NTDB_id=601828 K7T73_RS13840 WP_223661875.1 2637913..2640279(-) (recJ) [Bacillus badius strain NBPM-293]
MLKSRTRWIVRETDEKMRDQLTDRLGISPLLASLLINRGITETDAARSFLFDKGNEFHDPFLLDGMKAAVDRIHQAIADE
EPILIFGDYDADGVSSTSVMMTALTDLGAKVDFYIPNRFTEGYGPNEAAFRLAKEQGYQLIVTVDTGIAAVKEAAVAAEL
GVDLIITDHHEPGPELPQALAIIHPKLPEGNYPFPYLAGVGVAFKVAHALYGYLPEHLLDLAAVGTIADLVPLKGENRTI
AKAGINKLRQAARPGIEALLQLTSTKPESVDEETVGFMIAPRINAVGRLADADPAVDLLLTKDRTEAKELAQEIDMMNKE
RQTIVSEIAKEAMEMVQSHYPPEKYPVIVIGKENWNAGVIGIVASKLVETFYRPAIVLSFDKEANKAKGSARSIAGFDLF
KNLSTCRELLPHFGGHPMAAGMTLALSDVDELRERLCLLADEQLSAEDLIPVTELDAVVPLEEVSLAVIEELNMLAPYGM
GNPKPQVLIEKADFSTIRKIGSDKTHLKLQLEGSSGSLDTIGFGLGDYADHVAPFSKVSAIGELSINEWNNIRKPQLFLR
DLRVDQWQLFDVRGHRQFEKWISQVPKDRLFITFREETASDLNLEKLQAETVWIRSREEASQLSIDDKNIVLVDLPQEVE
VIEAVLQQGCPARIYAHFYQKESHFFSTMPTRDHFKWFYAFLLKRKSLDLIKNGDQLAKYRGWSRETIDFMSKVFFELDF
VTISEGIIHLNTQAPKRDLNESRTYQNKKMQFELENQLLYSSCQELKLWLDKHVNAPVKNEEEVKSWI

Nucleotide


Download         Length: 2367 bp        

>NTDB_id=601828 K7T73_RS13840 WP_223661875.1 2637913..2640279(-) (recJ) [Bacillus badius strain NBPM-293]
ATGTTAAAATCACGAACCCGCTGGATTGTCCGGGAGACAGACGAGAAAATGCGCGATCAACTAACAGACAGATTGGGAAT
TAGCCCGCTGTTAGCTTCTTTGTTGATCAATCGCGGCATAACTGAAACGGATGCAGCGCGGAGTTTTTTATTTGATAAAG
GAAATGAATTTCATGATCCGTTTTTGCTGGACGGCATGAAAGCGGCAGTTGACCGGATTCATCAGGCAATTGCCGATGAA
GAGCCTATTTTAATTTTCGGGGATTACGATGCGGATGGAGTCAGCAGCACATCTGTAATGATGACCGCCTTAACCGATTT
AGGAGCAAAGGTAGACTTTTACATTCCAAATCGTTTTACAGAAGGGTACGGTCCGAATGAAGCGGCTTTCCGCTTGGCCA
AAGAACAGGGATATCAGCTAATCGTTACGGTAGACACAGGAATTGCTGCAGTGAAGGAAGCAGCTGTGGCTGCTGAGCTT
GGCGTGGACTTGATCATCACGGATCACCATGAACCAGGACCGGAGCTGCCGCAGGCATTGGCTATTATCCATCCTAAACT
TCCGGAAGGGAACTATCCGTTTCCTTACTTAGCCGGTGTAGGGGTGGCTTTTAAGGTTGCTCACGCTTTGTATGGCTATC
TGCCGGAACACCTGCTGGATTTAGCAGCCGTCGGAACGATTGCAGATCTTGTGCCTTTAAAAGGGGAAAATCGAACCATT
GCGAAGGCAGGGATAAACAAGCTCCGTCAGGCGGCGCGGCCAGGCATTGAGGCGTTGTTGCAGTTAACGTCTACAAAGCC
GGAGTCGGTTGATGAGGAAACAGTAGGATTTATGATCGCTCCCCGCATTAATGCAGTAGGCCGTCTCGCTGATGCCGATC
CGGCTGTTGATTTGCTGCTTACAAAAGACCGGACGGAAGCAAAAGAGCTGGCTCAGGAAATTGACATGATGAACAAAGAA
CGGCAAACGATTGTTTCCGAGATTGCCAAGGAGGCAATGGAGATGGTGCAGTCTCATTACCCGCCTGAGAAATATCCGGT
TATTGTAATTGGAAAAGAAAACTGGAACGCCGGCGTGATTGGTATTGTTGCATCGAAATTAGTAGAAACGTTTTACCGTC
CGGCTATTGTGCTTAGCTTTGACAAGGAAGCGAATAAGGCAAAAGGGTCTGCAAGGAGCATTGCCGGCTTTGATCTATTT
AAGAATCTTTCCACATGCCGGGAGCTGCTCCCCCATTTTGGCGGACACCCAATGGCGGCAGGCATGACGTTGGCGCTGTC
TGACGTGGATGAATTAAGAGAGAGGCTTTGTTTACTTGCTGATGAACAGTTATCTGCGGAAGATCTAATTCCTGTGACTG
AGCTGGATGCCGTTGTGCCGCTGGAAGAGGTGAGCCTGGCGGTTATTGAGGAATTAAACATGCTGGCGCCTTATGGAATG
GGCAATCCGAAGCCGCAGGTGCTTATCGAGAAAGCAGATTTCTCAACGATTCGCAAAATTGGTTCGGATAAGACCCATTT
AAAGCTTCAGCTGGAAGGAAGCAGCGGATCACTTGATACGATTGGCTTTGGACTTGGGGATTACGCGGATCATGTGGCGC
CTTTTTCAAAAGTGTCCGCCATTGGAGAGCTGTCTATCAATGAATGGAACAATATTCGCAAGCCGCAGCTGTTTCTAAGA
GATTTGCGGGTCGACCAATGGCAGTTGTTTGACGTCAGAGGACATCGGCAGTTTGAAAAGTGGATCAGCCAGGTTCCAAA
GGACCGCTTGTTCATTACCTTTAGAGAAGAAACAGCTTCTGACTTGAACTTGGAGAAGCTTCAGGCAGAAACGGTGTGGA
TTCGCAGCCGTGAAGAAGCTTCGCAGCTATCCATTGATGACAAGAATATTGTACTTGTCGATCTGCCGCAGGAGGTGGAG
GTCATCGAGGCTGTATTGCAACAGGGCTGTCCGGCACGTATCTATGCCCATTTTTATCAAAAGGAAAGCCACTTTTTCAG
CACCATGCCGACAAGAGACCATTTTAAATGGTTCTATGCTTTTTTATTGAAACGCAAAAGCTTAGACTTAATCAAAAACG
GGGATCAGTTGGCCAAGTATCGAGGATGGTCGCGGGAAACCATTGATTTTATGTCAAAAGTGTTTTTTGAACTTGACTTT
GTTACAATAAGTGAGGGAATCATTCACTTAAACACACAAGCCCCTAAACGGGACCTGAATGAATCCCGAACGTATCAAAA
TAAGAAAATGCAATTTGAACTGGAGAATCAGCTGCTCTATTCCTCATGCCAGGAATTAAAGCTCTGGCTGGATAAGCACG
TGAATGCCCCTGTTAAGAATGAGGAGGAAGTTAAATCATGGATTTAA

Domains

Predicted by InterproScan.

DHHA1 domain (DHHA1)

(317-436)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-770)

RecJ OB domain (RecJ_OB)

(456-561)

DHH family (DHH)

(83-226)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

54.592

98.096

0.536