Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   K7T73_RS13735 Genome accession   NZ_CP082363
Coordinates   2614939..2617329 (-) Length   796 a.a.
NCBI ID   WP_223661865.1    Uniprot ID   -
Organism   Bacillus badius strain NBPM-293     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2609939..2622329
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K7T73_RS13720 (K7T73_13700) alaS 2610263..2612896 (-) 2634 WP_223661863.1 alanine--tRNA ligase -
  K7T73_RS13725 (K7T73_13705) - 2613240..2614319 (-) 1080 WP_223661864.1 AI-2E family transporter -
  K7T73_RS13730 (K7T73_13710) - 2614684..2614872 (-) 189 WP_041097411.1 hypothetical protein -
  K7T73_RS13735 (K7T73_13715) recD2 2614939..2617329 (-) 2391 WP_223661865.1 ATP-dependent RecD-like DNA helicase Machinery gene
  K7T73_RS13740 (K7T73_13720) - 2617342..2618004 (-) 663 WP_223661866.1 lipopolysaccharide assembly protein LapB -
  K7T73_RS13745 (K7T73_13725) mnmA 2618222..2619337 (-) 1116 WP_223661867.1 tRNA 2-thiouridine(34) synthase MnmA -
  K7T73_RS13750 (K7T73_13730) - 2619372..2620517 (-) 1146 WP_063385501.1 cysteine desulfurase family protein -
  K7T73_RS13755 (K7T73_13735) - 2620532..2620954 (-) 423 WP_063385500.1 cysteine metabolism transcriptional regulator CymR -
  K7T73_RS13760 (K7T73_13740) - 2620951..2621628 (-) 678 WP_223661868.1 YitT family protein -

Sequence

Protein


Download         Length: 796 a.a.        Molecular weight: 89225.86 Da        Isoelectric Point: 4.7391

>NTDB_id=601827 K7T73_RS13735 WP_223661865.1 2614939..2617329(-) (recD2) [Bacillus badius strain NBPM-293]
MEQGSMDLFANGEKYVKGRHLVTIFHNEENFYSVLRVRVLETNEACEDKEVVVTGYFPQIHEQEVYVFYGAFKDHPKFGR
QFQARHAQKEVPQTKQGIITYLSSDLFKGIGRKTAEMVVETLGEGAISKILDHPSVLDEVPRLSADKAKSLYETLLEHQG
LEQVMVALNQYGFGPQLSMKIYQAYQQQAIEIIQKNPYQLVEDIEGIGFGRADELGAQIGIDGEHPDRVKAGILFTIEQQ
CMQEGHCYLESEQLLQEVKALLDKSGKEQVSFEAIAEQLIVLEKEGKVVGEESRVFLPSLYFSEKGLVANIERLLKQTEY
EDQFPESEFLLALGDLEERTGVQYAPSQKEAIQKALMSPMMILTGGPGTGKTTVIKGIVELYSELHGCSLDPKAYGKDEP
FPVKLAAPTGRAAKRMAESTGLPAVTIHRLLGFSGQETHEDEDSREVQGRLLIVDEVSMVDIWLAHQLFKALPDDMQVVL
VGDEDQLPSVGPGQVLKDLLASGVLPTVKLTDIYRQEEGSSIIEMAHEIKSGQMPSNLTKQQKDRSFIACHVQQIPEAVE
QVVKSAIRKGFTAKDIQVLAPMYKGPAGIDRLNEILQEILNANPDGSRKQIDFGGVHYRIGDKVLQLVNQPEQNIFNGDI
GEVVSIFFAKENTEKQDMVIVSYEGNEVTYTRQDLNQITHAFCCSIHKSQGSEFPIVILPVVKSYYRMLRRNLLYTAITR
SKQFLILCGEEEAFRIGIERNDDLMRKTALKEKLMKTLAEEASEGEAFRSVALTEETITAIDPMIGMEEITPYDFL

Nucleotide


Download         Length: 2391 bp        

>NTDB_id=601827 K7T73_RS13735 WP_223661865.1 2614939..2617329(-) (recD2) [Bacillus badius strain NBPM-293]
ATGGAACAAGGGTCAATGGATTTGTTTGCCAATGGGGAAAAGTACGTTAAAGGCCGGCACCTTGTTACGATCTTTCATAA
TGAAGAGAATTTTTACTCTGTTCTGCGTGTTCGTGTGCTGGAAACAAATGAGGCCTGTGAAGACAAGGAGGTAGTCGTTA
CCGGTTACTTTCCGCAAATTCATGAACAGGAAGTGTATGTTTTTTATGGCGCTTTCAAAGACCATCCGAAGTTCGGGCGC
CAGTTTCAAGCCCGTCATGCCCAAAAAGAAGTGCCGCAGACAAAGCAAGGCATCATTACTTACTTATCCAGTGACTTATT
TAAAGGGATTGGAAGAAAAACAGCAGAAATGGTGGTTGAAACGTTAGGAGAAGGAGCGATCTCCAAAATCCTTGATCATC
CGTCTGTGCTTGATGAGGTGCCGCGCCTTTCTGCGGATAAAGCGAAAAGCCTGTATGAAACCCTTCTTGAACACCAGGGG
CTGGAGCAGGTGATGGTGGCGCTTAATCAATACGGATTCGGTCCGCAGCTCTCAATGAAGATTTACCAGGCGTATCAGCA
GCAGGCTATTGAAATCATTCAAAAAAATCCTTATCAGCTTGTTGAAGATATTGAAGGGATTGGCTTTGGACGAGCCGATG
AGCTTGGCGCACAGATCGGCATTGATGGAGAACATCCTGATCGTGTGAAGGCCGGTATCTTATTTACCATTGAGCAACAA
TGCATGCAAGAGGGGCATTGTTATTTAGAATCGGAACAGCTGTTGCAGGAAGTCAAAGCTTTGCTGGACAAGAGCGGCAA
AGAGCAAGTGTCTTTTGAAGCAATTGCCGAGCAGCTGATCGTTTTAGAGAAAGAGGGAAAAGTAGTCGGGGAAGAGAGCC
GGGTGTTTTTGCCCTCTTTATATTTTTCGGAAAAAGGTCTTGTCGCCAACATTGAACGTTTGCTCAAGCAAACAGAGTAT
GAAGATCAATTTCCTGAATCAGAGTTTCTGCTGGCGCTCGGCGATTTAGAAGAGCGAACCGGCGTCCAATATGCCCCTTC
TCAAAAAGAGGCGATCCAAAAAGCACTTATGTCGCCAATGATGATTCTGACAGGGGGACCGGGCACAGGAAAGACAACGG
TCATTAAAGGCATTGTGGAGCTTTATTCCGAACTGCATGGCTGTTCGCTTGATCCCAAGGCCTATGGAAAAGATGAGCCA
TTTCCAGTGAAGCTGGCAGCGCCAACCGGACGGGCGGCCAAACGAATGGCAGAGTCGACAGGGCTTCCAGCGGTCACTAT
CCACCGCTTGCTTGGATTCAGCGGCCAGGAAACACATGAAGACGAAGACAGCCGGGAGGTGCAGGGGCGGCTGCTCATTG
TTGATGAAGTATCAATGGTTGACATCTGGCTCGCTCACCAGTTATTTAAAGCATTGCCGGATGATATGCAGGTTGTGCTT
GTCGGTGATGAGGATCAGCTTCCATCTGTTGGACCCGGACAGGTGCTGAAGGACTTGCTTGCATCCGGTGTGCTTCCGAC
TGTTAAGCTAACGGATATTTACCGGCAGGAGGAAGGGTCCTCCATTATTGAAATGGCTCATGAAATCAAAAGCGGCCAGA
TGCCGTCCAACTTAACAAAGCAGCAAAAGGATCGTTCTTTTATCGCTTGCCATGTCCAGCAAATCCCTGAAGCAGTGGAG
CAAGTGGTGAAAAGTGCAATTAGAAAGGGATTTACGGCGAAAGACATCCAAGTTCTTGCCCCCATGTATAAAGGGCCTGC
GGGAATTGATCGTCTAAATGAAATTTTGCAGGAGATTCTTAATGCCAACCCGGACGGCTCCCGTAAGCAAATTGATTTTG
GAGGCGTCCACTACCGTATTGGCGACAAGGTGCTCCAGCTTGTGAACCAGCCGGAGCAAAATATTTTTAACGGTGACATC
GGAGAAGTAGTGTCCATCTTTTTTGCAAAAGAAAATACAGAAAAGCAAGATATGGTTATCGTCTCTTACGAAGGAAATGA
AGTCACCTATACAAGACAGGACTTAAATCAAATCACTCATGCCTTCTGCTGCTCCATCCATAAATCACAGGGAAGCGAGT
TTCCGATTGTCATTCTCCCGGTTGTAAAGAGCTACTACCGGATGCTGCGGCGTAATCTGCTTTACACAGCTATCACGCGC
AGCAAGCAGTTTTTGATTTTGTGCGGGGAAGAAGAAGCTTTTCGGATCGGCATTGAACGTAATGATGACCTTATGCGTAA
AACGGCGTTAAAAGAAAAGTTAATGAAGACGCTAGCGGAGGAAGCATCAGAAGGGGAGGCGTTTCGCTCCGTGGCATTGA
CTGAAGAAACAATTACAGCCATCGATCCGATGATTGGGATGGAAGAGATCACACCTTACGACTTTTTATAA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(680-728)

Helix-hairpin-helix containing domain (HHH_RecD2)

(157-248)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(592-661)

AAA domain (AAA_30)

(344-551)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

62.281

100

0.624