Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   K7T73_RS06200 Genome accession   NZ_CP082363
Coordinates   1229764..1230543 (+) Length   259 a.a.
NCBI ID   WP_041099966.1    Uniprot ID   -
Organism   Bacillus badius strain NBPM-293     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1224764..1235543
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K7T73_RS06180 (K7T73_06170) trmFO 1225389..1226693 (+) 1305 WP_063383507.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  K7T73_RS06185 (K7T73_06175) xerC 1226754..1227656 (+) 903 WP_041099962.1 tyrosine recombinase XerC -
  K7T73_RS06190 (K7T73_06180) hslV 1227679..1228224 (+) 546 WP_063383509.1 ATP-dependent protease subunit HslV -
  K7T73_RS06195 (K7T73_06185) hslU 1228238..1229647 (+) 1410 WP_162301612.1 HslU--HslV peptidase ATPase subunit -
  K7T73_RS06200 (K7T73_06190) codY 1229764..1230543 (+) 780 WP_041099966.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  K7T73_RS06205 (K7T73_06195) flgB 1230935..1231327 (+) 393 WP_063383510.1 flagellar basal body rod protein FlgB -
  K7T73_RS06210 (K7T73_06200) flgC 1231330..1231788 (+) 459 WP_223663170.1 flagellar basal body rod protein FlgC -
  K7T73_RS06215 (K7T73_06205) fliE 1231803..1232111 (+) 309 WP_223663172.1 flagellar hook-basal body complex protein FliE -
  K7T73_RS06220 (K7T73_06210) fliF 1232175..1233761 (+) 1587 WP_223663174.1 flagellar basal-body MS-ring/collar protein FliF -
  K7T73_RS06225 (K7T73_06215) fliG 1233810..1234823 (+) 1014 WP_041099974.1 flagellar motor switch protein FliG -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29123.46 Da        Isoelectric Point: 5.0560

>NTDB_id=601818 K7T73_RS06200 WP_041099966.1 1229764..1230543(+) (codY) [Bacillus badius strain NBPM-293]
MNLLEKTRKINKLLQDAAGKHVNFKEMAESLSDLIEANVYVVSRRGKLLGFGVNQQIENERMKKMLAERQFPEEYTKNLF
NLEETSSNLGVDSEYTAFPVENKELFKNGHTTIVPIKGAGERLGTLVLARLEEKFHDEDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGKEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLMELEKLKSN

Nucleotide


Download         Length: 780 bp        

>NTDB_id=601818 K7T73_RS06200 WP_041099966.1 1229764..1230543(+) (codY) [Bacillus badius strain NBPM-293]
ATGAATTTGCTAGAAAAAACAAGAAAAATTAACAAGTTGCTGCAGGATGCAGCAGGCAAGCATGTCAACTTCAAAGAAAT
GGCAGAATCTCTGTCCGACTTAATTGAGGCCAATGTATATGTTGTCAGCCGCCGTGGAAAATTGCTCGGCTTCGGTGTTA
ATCAGCAAATTGAAAACGAGCGGATGAAAAAAATGCTCGCAGAACGCCAGTTTCCTGAGGAGTATACAAAAAACCTATTT
AATTTAGAAGAGACATCTTCCAATCTCGGCGTTGACAGTGAGTACACAGCTTTCCCTGTGGAAAATAAAGAGCTATTTAA
AAACGGCCATACAACGATTGTGCCGATTAAAGGAGCGGGAGAGCGCCTTGGTACGCTCGTTCTGGCCCGTTTAGAAGAAA
AGTTCCATGATGAGGATCTCATTCTTGCTGAATACGGCGCTACTGTTGTTGGGATGGAAATCCTTCGCGAAAAAGCAGAG
GAGATTGAAGAAGAGGCAAGAAGCAAAGCGGTCGTGCAAATGGCGATCAGCTCCCTTTCTTACAGCGAATTAGAAGCCAT
TGAACACATTTTTGAAGAGCTGGATGGCAAAGAAGGATTGCTGGTTGCTTCGAAAATTGCTGACCGCGTAGGCATTACTC
GCTCTGTTATTGTGAATGCCCTGCGGAAGCTTGAAAGTGCTGGTGTGATCGAATCCCGTTCTTTAGGGATGAAGGGTACG
TATATTAAAGTACTAAACGATAAATTCTTGATGGAATTGGAAAAATTAAAATCAAACTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(2-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

83.012

100

0.83
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.368

95.367

0.452