Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   K7H94_RS00590 Genome accession   NZ_CP082346
Coordinates   126252..127772 (-) Length   506 a.a.
NCBI ID   WP_215800541.1    Uniprot ID   -
Organism   Pantoea dispersa strain Lsch     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 121252..132772
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K7H94_RS00580 (K7H94_00580) hdfR 124942..125763 (-) 822 WP_031279770.1 HTH-type transcriptional regulator HdfR -
  K7H94_RS00585 (K7H94_00585) - 125885..126223 (+) 339 WP_021507919.1 DUF413 domain-containing protein -
  K7H94_RS00590 (K7H94_00590) comM 126252..127772 (-) 1521 WP_215800541.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  K7H94_RS00595 (K7H94_00595) ilvL 128101..128199 (+) 99 WP_071813600.1 ilv operon leader peptide -
  K7H94_RS00600 (K7H94_00600) ilvG 128349..129995 (+) 1647 WP_222951490.1 acetolactate synthase 2 catalytic subunit -
  K7H94_RS00605 (K7H94_00605) ilvM 129992..130249 (+) 258 WP_008106624.1 acetolactate synthase 2 small subunit -
  K7H94_RS00610 (K7H94_00610) - 130268..131197 (+) 930 WP_021507916.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54985.19 Da        Isoelectric Point: 7.6255

>NTDB_id=601647 K7H94_RS00590 WP_215800541.1 126252..127772(-) (comM) [Pantoea dispersa strain Lsch]
MSLSKVLTRAALGVQAPLVTIEVHISNGLPALTLVGLPETTVKEARERVRSAIINSGFTFPAKRVTINLAPADLPKEGGR
YDLPIAIAILAASEQLPGDKLAHYEFLGELALNGALCGVQAAIPAAMAALQAGRQMVLAEQNQQDVGLIQQGETLVGKHL
VEICAFLHNQTALTVAHYQPETVPHEQQDLSDIIGQQQGRRALEITAAGGHNLLLLGPPGTGKTMLATRLPGIMPPLDDQ
EALECAAIASLVSSGTLHHQWRKRPFRAPHHSASLYALVGGGSLPRPGEISLAHNGVLFLDELPEFERKALDALREPIES
GEIAISRSRAKVTFPARFQLIGAMNPSPTGHYQGNHNRCTPQQVLRYLSRLSGPFLDRFDLSLEIPLLPGGSLSQKQQHS
ETSAQVRARVLAARAIQMARAGKVNAQLSNPEIARDCVLQQQDAEWLEEILNALGLSVRAWQRILKVARTIADLADERQI
TRQHLQEAVGYRSIDRLLIYLHKSLE

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=601647 K7H94_RS00590 WP_215800541.1 126252..127772(-) (comM) [Pantoea dispersa strain Lsch]
ATGTCTTTATCGAAAGTATTAACACGCGCGGCGCTCGGAGTGCAGGCTCCACTGGTGACGATTGAAGTGCATATCAGCAA
TGGTCTGCCAGCATTGACGCTGGTAGGTCTGCCGGAAACCACCGTCAAAGAAGCCCGCGAACGCGTGCGCAGCGCCATTA
TCAATAGCGGTTTCACCTTTCCGGCGAAGCGCGTCACCATTAATCTCGCGCCAGCAGATTTACCTAAAGAGGGTGGGCGC
TACGACCTGCCGATCGCTATCGCCATTCTCGCGGCCTCAGAGCAGCTGCCAGGCGATAAGCTGGCCCATTATGAGTTCCT
GGGTGAGCTGGCGCTAAACGGCGCGCTGTGTGGCGTTCAGGCCGCGATTCCTGCTGCCATGGCGGCACTGCAGGCCGGGC
GTCAGATGGTCTTAGCGGAGCAGAATCAACAGGATGTCGGCCTGATACAACAGGGTGAAACGCTGGTGGGCAAGCATCTG
GTGGAGATCTGCGCTTTCCTGCATAACCAGACGGCGCTGACGGTCGCCCACTACCAGCCTGAAACGGTGCCGCACGAGCA
GCAGGACCTGAGCGATATTATTGGCCAGCAGCAGGGACGGCGCGCGCTGGAAATTACCGCCGCCGGTGGCCATAACCTGT
TGCTGCTGGGCCCGCCCGGCACCGGTAAGACCATGCTGGCAACCCGATTGCCCGGCATTATGCCTCCGCTGGACGACCAG
GAAGCGCTGGAGTGCGCCGCAATTGCCAGCCTGGTCAGCAGCGGTACGCTACATCATCAGTGGCGTAAACGGCCGTTCAG
AGCGCCTCATCACAGCGCATCGTTGTATGCGCTGGTCGGCGGAGGATCACTACCGCGGCCGGGCGAAATTTCGCTGGCGC
ACAACGGGGTGCTGTTTCTTGATGAACTGCCCGAGTTTGAGCGCAAAGCACTGGATGCGTTACGCGAGCCGATTGAGTCC
GGAGAAATCGCCATTTCCCGTTCCCGCGCCAAAGTCACTTTCCCTGCACGCTTTCAGCTGATTGGTGCAATGAATCCCAG
CCCGACGGGCCATTATCAGGGGAATCATAATCGCTGCACGCCGCAGCAGGTGCTGCGCTATCTCAGCCGGCTGTCTGGCC
CGTTTCTGGATCGCTTCGATCTGTCGCTGGAGATTCCGCTGCTACCGGGCGGCTCGCTCAGCCAGAAGCAGCAGCACAGC
GAAACCAGCGCGCAGGTGCGCGCCCGCGTACTGGCCGCCCGGGCGATACAGATGGCACGCGCGGGCAAAGTGAATGCGCA
GTTGTCGAATCCGGAGATCGCCCGTGATTGTGTGTTACAGCAGCAGGACGCGGAATGGCTGGAGGAGATCCTGAATGCAC
TGGGATTATCGGTGCGTGCATGGCAGCGCATCTTAAAGGTGGCGAGAACCATCGCAGATTTAGCGGATGAACGGCAGATT
ACGCGTCAGCATCTGCAGGAGGCGGTGGGATATCGCAGTATCGATCGTTTACTGATTTACCTGCATAAAAGCCTGGAATG
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-388)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

62.227

99.407

0.619
  comM Glaesserella parasuis strain SC1401

62.028

99.407

0.617
  comM Vibrio cholerae strain A1552

61.355

99.209

0.609
  comM Vibrio campbellii strain DS40M4

60.558

99.209

0.601
  comM Legionella pneumophila str. Paris

48.089

98.221

0.472
  comM Legionella pneumophila strain ERS1305867

48.089

98.221

0.472
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.281

100

0.433