Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   LPT21_RS04400 Genome accession   NZ_CP099497
Coordinates   893980..894753 (+) Length   257 a.a.
NCBI ID   WP_000055337.1    Uniprot ID   P63843
Organism   Staphylococcus aureus strain 0213-M-4A     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 888980..899753
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPT21_RS04380 (LPT21_04380) trmFO 889324..890631 (+) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  LPT21_RS04385 (LPT21_04385) xerC 891048..891944 (+) 897 WP_001015606.1 tyrosine recombinase XerC -
  LPT21_RS04390 (LPT21_04390) hslV 891941..892486 (+) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  LPT21_RS04395 (LPT21_04395) hslU 892552..893955 (+) 1404 WP_000379054.1 ATP-dependent protease ATPase subunit HslU -
  LPT21_RS04400 (LPT21_04400) codY 893980..894753 (+) 774 WP_000055337.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  LPT21_RS04405 (LPT21_04405) - 894804..894896 (+) 93 WP_001790530.1 hypothetical protein -
  LPT21_RS04410 (LPT21_04410) rpsB 895095..895862 (+) 768 WP_000268484.1 30S ribosomal protein S2 -
  LPT21_RS04415 (LPT21_04415) - 895896..896009 (+) 114 WP_001789890.1 hypothetical protein -
  LPT21_RS04420 (LPT21_04420) tsf 896044..896925 (+) 882 WP_000201387.1 translation elongation factor Ts -
  LPT21_RS04425 (LPT21_04425) pyrH 897062..897784 (+) 723 WP_000057330.1 UMP kinase -
  LPT21_RS04430 (LPT21_04430) frr 897803..898357 (+) 555 WP_001280006.1 ribosome recycling factor -
  LPT21_RS04435 (LPT21_04435) - 898730..899500 (+) 771 WP_000473705.1 isoprenyl transferase -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28755.13 Da        Isoelectric Point: 6.0680

>NTDB_id=601632 LPT21_RS04400 WP_000055337.1 893980..894753(+) (codY) [Staphylococcus aureus strain 0213-M-4A]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=601632 LPT21_RS04400 WP_000055337.1 893980..894753(+) (codY) [Staphylococcus aureus strain 0213-M-4A]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGATCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTTTTCCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGAGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCGAT
TGAACATATCTTTGAAGAACTTGGCGGTACGGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTTATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAGTAG

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P63843

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

64.202

100

0.642
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428