Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   K7H07_RS06090 Genome accession   NZ_CP082336
Coordinates   1262906..1265299 (+) Length   797 a.a.
NCBI ID   WP_222985263.1    Uniprot ID   -
Organism   Staphylococcus arlettae strain AHKW2e     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1257906..1270299
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K7H07_RS06070 (K7H07_06070) sal 1258013..1259647 (+) 1635 WP_002510460.1 Sal family ABC-F type ribosomal protection protein -
  K7H07_RS06075 (K7H07_06075) - 1259709..1260851 (+) 1143 WP_002510461.1 cysteine desulfurase family protein -
  K7H07_RS06080 (K7H07_06080) mnmA 1260853..1261965 (+) 1113 WP_021459899.1 tRNA 2-thiouridine(34) synthase MnmA -
  K7H07_RS06085 (K7H07_06085) - 1262237..1262902 (+) 666 WP_021459900.1 tetratricopeptide repeat protein -
  K7H07_RS06090 (K7H07_06090) recD2 1262906..1265299 (+) 2394 WP_222985263.1 ATP-dependent RecD-like DNA helicase Machinery gene
  K7H07_RS06095 (K7H07_06095) alaS 1265621..1268251 (+) 2631 WP_193325321.1 alanine--tRNA ligase -
  K7H07_RS06100 (K7H07_06100) - 1268316..1268579 (+) 264 WP_002510466.1 IreB family regulatory phosphoprotein -
  K7H07_RS06105 (K7H07_06105) ruvX 1268582..1269010 (+) 429 WP_021459902.1 Holliday junction resolvase RuvX -
  K7H07_RS06110 (K7H07_06110) - 1269027..1269359 (+) 333 WP_002510468.1 DUF1292 domain-containing protein -

Sequence

Protein


Download         Length: 797 a.a.        Molecular weight: 89342.96 Da        Isoelectric Point: 4.4329

>NTDB_id=601582 K7H07_RS06090 WP_222985263.1 1262906..1265299(+) (recD2) [Staphylococcus arlettae strain AHKW2e]
MADPTLFNYSMIKGTVDAILFQNKDNFYTVLKVDTIETNESLDSMPTVVGFFPEIVEGDVYTFKGQIATHPKYGKQLKAD
IFEKELPQTKEAIISYLSSDLFKGIGKKTAQNIVNTLGENAIADILNDSQVLSKVPSLSASKQKQIAEQIASNQETEQII
IRLHDLGFGPKLAMNIYQAYLGETLNVVEKTPYQLVYDVKGIGFNKADMLAKNIGIQYNDPERLKAGILYILEEECIKQG
HTYLPTQFVLELVQDILSNPPSEVIDQSILANQVEQLVNENKLVQQEAELAIPSLYYSEIKSVQNLYRNFTYTKKLKDIE
MSDLLLEIGNIEDQNTVSYAESQKEALQTAINSKVMLLTGGPGTGKTTVIKGIVELYAEIHGLSLDYDDYKEDDYPIVLG
APTGRASKRLAEATGLEAMTIHRLIGWNQETQPEDILDNEINAKLIIIDEMSMVDTWLFHQFMSAVPLDAQVILVGDEDQ
LPSVGPGQVFKDLIDSGVIPRVNLTEVYRQQDGSSIIELAHKIKLGLPIDITERFHDRNFINCQTEQIPQVVEKVVASAV
NKGYDMSDIQVLAPMYKGSAGIKRLNQVLQDILNPKIKDTREIAFGEVLFRKGDKVLQLVNRPNDNIFNGDIGVIVGIFW
AKENALDKDVLVVDFEGNEITFTRQDLMELTHAYCTSIHKSQGSEFPIVIMPMVKQYFRMLQKPILYTGLTRAKQSLVFL
GDPNAFTIGLKTNGQVRMTQLCDLLQAYFDSDSGKDDDQEDINQQLNSTVTLTESTIYQIDPMINMGQLSPYDFVND

Nucleotide


Download         Length: 2394 bp        

>NTDB_id=601582 K7H07_RS06090 WP_222985263.1 1262906..1265299(+) (recD2) [Staphylococcus arlettae strain AHKW2e]
ATGGCAGATCCTACACTGTTTAACTATTCAATGATTAAAGGTACAGTAGATGCTATTTTGTTTCAAAACAAAGATAATTT
TTATACTGTATTAAAAGTTGATACAATTGAAACCAATGAATCATTAGATAGTATGCCTACAGTTGTAGGGTTCTTTCCTG
AAATTGTGGAAGGTGATGTCTATACATTTAAAGGACAAATAGCTACGCATCCTAAATATGGTAAACAATTAAAAGCAGAT
ATTTTTGAAAAGGAATTACCACAAACGAAGGAAGCAATTATCAGTTATTTGTCTAGTGACTTATTCAAAGGTATTGGTAA
AAAGACGGCTCAAAATATTGTTAATACACTCGGTGAAAATGCCATTGCTGATATATTAAACGATTCACAAGTTTTAAGTA
AGGTGCCGAGTTTATCTGCAAGCAAACAAAAACAAATTGCAGAACAAATTGCTAGCAACCAAGAAACAGAACAAATAATA
ATTAGATTACATGACTTAGGCTTTGGGCCGAAGTTAGCAATGAATATATACCAAGCTTATTTAGGTGAAACACTCAATGT
AGTAGAAAAGACACCTTACCAATTAGTATATGATGTCAAGGGTATTGGTTTTAATAAAGCTGATATGTTAGCCAAAAATA
TCGGTATTCAATATAACGATCCAGAACGTTTAAAAGCAGGAATACTCTATATACTAGAAGAAGAGTGTATTAAACAAGGA
CATACCTATTTACCTACGCAATTTGTTTTAGAATTGGTACAGGATATTTTATCTAATCCTCCATCTGAAGTCATAGATCA
ATCGATATTAGCTAATCAAGTTGAACAGCTAGTCAATGAAAATAAATTAGTACAGCAAGAAGCTGAATTAGCTATTCCAA
GTTTGTATTATTCAGAAATAAAGAGTGTCCAAAATTTATATCGCAATTTCACGTACACTAAAAAATTGAAAGATATTGAA
ATGTCCGACTTATTATTAGAAATTGGTAATATAGAGGACCAAAATACAGTCAGTTATGCTGAATCACAAAAAGAAGCACT
ACAAACCGCTATTAATTCAAAAGTGATGTTATTAACAGGAGGACCTGGTACAGGGAAAACAACTGTAATAAAAGGCATCG
TAGAATTGTATGCTGAAATACATGGCCTTTCTTTAGATTATGACGATTATAAAGAAGATGATTATCCTATTGTGTTAGGT
GCTCCGACAGGGCGAGCGTCTAAACGATTAGCTGAAGCTACAGGATTAGAAGCTATGACCATTCACCGACTTATTGGTTG
GAATCAAGAAACACAACCTGAAGATATTTTAGATAATGAAATTAATGCTAAATTGATTATTATAGATGAGATGTCGATGG
TAGATACTTGGTTATTTCATCAATTTATGAGTGCAGTACCGTTAGATGCACAAGTCATTTTAGTTGGTGATGAGGATCAA
TTACCGTCAGTTGGTCCCGGACAAGTCTTTAAAGATTTAATTGACTCTGGAGTTATTCCTAGAGTTAATTTAACTGAAGT
ATATAGACAGCAAGATGGATCTAGTATTATAGAGTTAGCGCATAAAATTAAATTGGGGTTACCAATAGATATTACCGAGC
GTTTTCATGACCGTAATTTTATCAACTGTCAAACAGAACAAATACCACAAGTTGTTGAAAAAGTTGTAGCTAGTGCTGTT
AACAAAGGGTATGATATGAGTGATATTCAAGTATTAGCACCTATGTACAAAGGTTCTGCAGGCATTAAGCGATTAAATCA
AGTATTACAAGATATATTAAATCCAAAAATAAAAGATACGCGTGAAATTGCATTTGGTGAAGTTTTATTTAGAAAAGGCG
ATAAAGTATTGCAATTGGTTAATAGACCAAATGATAATATTTTTAATGGAGATATCGGAGTAATTGTAGGTATTTTTTGG
GCTAAAGAAAATGCCTTAGATAAAGATGTATTAGTGGTTGATTTTGAAGGTAATGAGATAACATTTACACGACAAGATTT
AATGGAATTAACACATGCTTATTGTACATCTATCCATAAATCACAAGGTTCTGAATTTCCAATTGTCATTATGCCTATGG
TAAAACAGTATTTCAGAATGTTACAAAAGCCTATTTTGTATACAGGTCTGACACGTGCAAAACAATCATTGGTCTTTTTA
GGTGATCCCAATGCATTTACAATTGGTTTAAAGACAAATGGTCAAGTAAGAATGACTCAATTATGTGACTTACTGCAAGC
TTACTTTGATAGTGACTCAGGTAAAGATGATGACCAAGAAGATATTAACCAGCAACTTAATAGTACAGTTACTTTGACTG
AGAGTACCATATATCAAATTGACCCAATGATTAATATGGGGCAATTATCACCATATGACTTCGTAAATGATTGA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(672-719)

AAA domain (AAA_30)

(339-545)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(585-655)

Helix-hairpin-helix containing domain (HHH_RecD2)

(153-243)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

50.566

99.749

0.504