Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   K7H06_RS15435 Genome accession   NZ_CP082326
Coordinates   3311492..3313354 (-) Length   620 a.a.
NCBI ID   WP_223036926.1    Uniprot ID   -
Organism   Crassaminicella profunda strain Ra1766H     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3306492..3318354
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K7H06_RS15410 (K7H06_15410) - 3307230..3308033 (+) 804 WP_223036922.1 membrane lipoprotein lipid attachment site-containing protein -
  K7H06_RS15415 (K7H06_15415) - 3308158..3308778 (-) 621 WP_246637550.1 hypothetical protein -
  K7H06_RS15420 (K7H06_15420) dhaM 3309105..3309494 (-) 390 WP_223036923.1 dihydroxyacetone kinase phosphoryl donor subunit DhaM -
  K7H06_RS15425 (K7H06_15425) dhaL 3309509..3310135 (-) 627 WP_223036924.1 dihydroxyacetone kinase subunit DhaL -
  K7H06_RS15430 (K7H06_15430) dhaK 3310169..3311161 (-) 993 WP_223036925.1 dihydroxyacetone kinase subunit DhaK -
  K7H06_RS15435 (K7H06_15435) rcrQ 3311492..3313354 (-) 1863 WP_223036926.1 ABC transporter ATP-binding protein Regulator
  K7H06_RS15440 (K7H06_15440) - 3313351..3315561 (-) 2211 WP_223036927.1 ABC transporter ATP-binding protein -
  K7H06_RS15445 (K7H06_15445) - 3315807..3316250 (+) 444 WP_223036928.1 MarR family transcriptional regulator -
  K7H06_RS15450 (K7H06_15450) - 3316467..3318269 (-) 1803 WP_246637551.1 MutS family DNA mismatch repair protein -

Sequence

Protein


Download         Length: 620 a.a.        Molecular weight: 69008.29 Da        Isoelectric Point: 8.5038

>NTDB_id=601503 K7H06_RS15435 WP_223036926.1 3311492..3313354(-) (rcrQ) [Crassaminicella profunda strain Ra1766H]
MNDRKIGNKRSGGFGGGHMGGMGKTEKAKDFKGTMNKLVKYLKPYSLSITIVIIFAIGSAAFSIVGPKILGKATTKIFEG
LVSKVMGVEGASIDFAYIGNIVIWLLGLYIMSALFSIVQGYIISGVAQKVSYHLRKEISEKINRMPLKYFDRKTHGEVLS
RVTNDVDTVSQTLNQSMSQIITSVITIIGVLIMMLSISWQMTLVALIMLPASMILVMAVVKKSQKYFKSQQEFLGHVNGH
VEEIYGGHNIMKAFNGEEEAVQQFEELNNTLYYSAWKSQFLSGMMMPIMTFIGNIGYVAVSILGGWLAIKKTIEVGDILS
FVQYVRSFTQPIAQVAQIANVLQSTVAAAERVFEFLEEEEEVLEVENPVKLRDVKGKVAFEDVQFGYTKDKTIIKNFSAC
IKSGQKVAIVGPTGAGKTTIVKLLMRFYDVQGGVISIDGHDIRDFEREDLRNMFGMVLQDTWLFNGSIMENIRYGRLNAT
DKEVIEAAKSAHVENFVKMLPNGYNMELNEEASNISQGQKQLLTIARAILSDPKILILDEATSSVDTRTEVLIQKAMENL
MKGRTSFIIAHRLSTIRDADLILVMKDGDIVEQGHHEELLNMKGFYASLYNSQFRNVNAS

Nucleotide


Download         Length: 1863 bp        

>NTDB_id=601503 K7H06_RS15435 WP_223036926.1 3311492..3313354(-) (rcrQ) [Crassaminicella profunda strain Ra1766H]
ATGAATGATAGAAAAATAGGGAATAAAAGGTCAGGTGGCTTTGGTGGAGGTCACATGGGTGGCATGGGAAAAACTGAGAA
AGCCAAAGATTTTAAGGGGACGATGAATAAATTAGTAAAGTATCTGAAACCCTATAGCTTATCAATTACTATTGTAATTA
TTTTTGCCATAGGGAGTGCAGCTTTTTCTATAGTAGGTCCTAAGATTTTAGGTAAGGCTACAACAAAAATTTTTGAAGGT
TTAGTAAGCAAGGTGATGGGAGTAGAAGGTGCTTCAATTGACTTTGCATATATAGGAAATATCGTGATTTGGCTTTTGGG
ATTGTATATAATGAGTGCCTTATTTTCAATCGTACAAGGTTATATCATTTCAGGAGTAGCACAGAAGGTATCTTATCATT
TAAGAAAAGAAATTTCAGAAAAAATCAACCGTATGCCACTTAAATACTTTGATAGGAAGACTCATGGAGAAGTATTATCA
AGGGTTACAAATGATGTTGATACGGTAAGCCAAACATTAAACCAAAGTATGTCACAGATTATAACATCTGTTATTACAAT
CATTGGTGTCCTCATCATGATGCTATCAATAAGCTGGCAAATGACGTTGGTGGCATTAATAATGTTACCAGCATCAATGA
TCTTAGTCATGGCAGTAGTAAAGAAATCACAAAAATACTTTAAGTCTCAACAGGAGTTTTTAGGTCATGTGAATGGTCAT
GTAGAAGAAATTTATGGTGGCCATAATATCATGAAAGCATTTAACGGAGAAGAAGAAGCTGTTCAACAATTTGAAGAGCT
AAATAACACCCTGTACTATTCTGCATGGAAGTCTCAATTTCTATCTGGAATGATGATGCCTATTATGACCTTTATTGGAA
ATATAGGCTATGTAGCTGTATCTATTTTAGGCGGATGGCTTGCCATAAAAAAGACGATTGAAGTGGGAGATATCTTATCA
TTCGTGCAATACGTTAGAAGTTTTACTCAACCAATAGCTCAAGTAGCTCAAATAGCTAATGTTCTTCAATCAACGGTAGC
AGCTGCTGAAAGAGTTTTTGAATTCTTAGAAGAGGAAGAAGAGGTTTTAGAAGTAGAAAATCCAGTTAAGCTTAGAGATG
TTAAGGGGAAAGTTGCATTTGAAGATGTTCAATTTGGATATACGAAAGACAAGACTATTATAAAGAATTTTTCAGCTTGC
ATCAAATCAGGACAAAAGGTAGCCATTGTAGGACCAACAGGAGCTGGCAAAACAACTATTGTTAAGCTTTTAATGCGTTT
TTATGATGTACAGGGTGGGGTTATATCCATTGATGGACACGATATAAGAGATTTTGAGAGAGAAGATTTACGTAATATGT
TTGGGATGGTGCTTCAAGATACTTGGTTGTTTAATGGTTCAATTATGGAAAATATTCGTTATGGCAGACTCAATGCTACA
GATAAAGAAGTAATTGAAGCAGCCAAGTCAGCACATGTAGAAAACTTTGTAAAGATGTTACCAAATGGATACAATATGGA
GCTAAATGAAGAAGCAAGTAACATATCTCAAGGACAAAAGCAACTATTGACCATTGCTCGTGCAATTTTATCAGATCCTA
AAATATTAATCCTTGATGAGGCAACAAGCTCTGTTGATACACGTACAGAAGTACTGATTCAAAAGGCAATGGAAAATCTA
ATGAAAGGAAGAACAAGCTTTATTATTGCTCATAGACTGTCAACCATTCGTGATGCAGATTTAATTCTTGTTATGAAGGA
TGGAGATATTGTAGAGCAAGGGCATCATGAAGAGTTATTAAATATGAAGGGTTTTTATGCGTCCCTTTATAATAGTCAGT
TTAGAAATGTTAATGCTTCATAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(50-331)

ABC transporter (ABC_tran)

(395-543)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

51.458

94.032

0.484