Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   NC516_RS05920 Genome accession   NZ_CP099485
Coordinates   1176036..1177775 (-) Length   579 a.a.
NCBI ID   WP_016265230.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain WiKim0095     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1171036..1182775
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NC516_RS05900 (NC516_05900) pdhA 1171059..1172168 (-) 1110 WP_056946690.1 pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha -
  NC516_RS05905 (NC516_05905) - 1172491..1173174 (-) 684 WP_011374786.1 hypothetical protein -
  NC516_RS05910 (NC516_05910) def 1173680..1174237 (+) 558 WP_011374787.1 peptide deformylase -
  NC516_RS05915 (NC516_05915) rcrQ 1174286..1176049 (-) 1764 WP_061826978.1 ABC transporter ATP-binding protein Regulator
  NC516_RS05920 (NC516_05920) rcrP 1176036..1177775 (-) 1740 WP_016265230.1 ABC transporter ATP-binding protein Regulator
  NC516_RS05925 (NC516_05925) - 1177803..1178288 (-) 486 WP_016265231.1 hypothetical protein -
  NC516_RS05930 (NC516_05930) - 1178485..1178697 (+) 213 WP_011374791.1 DNA-directed RNA polymerase subunit epsilon -
  NC516_RS05935 (NC516_05935) - 1178702..1180390 (+) 1689 WP_016265232.1 ribonuclease J -
  NC516_RS05940 (NC516_05940) - 1180523..1181488 (+) 966 WP_016265233.1 diacylglycerol kinase family protein -
  NC516_RS05945 (NC516_05945) thiW 1181538..1182044 (-) 507 WP_025015722.1 energy coupling factor transporter S component ThiW -
  NC516_RS05950 (NC516_05950) tenA 1182034..1182720 (-) 687 WP_016265235.1 thiaminase II -

Sequence

Protein


Download         Length: 579 a.a.        Molecular weight: 64667.15 Da        Isoelectric Point: 9.1434

>NTDB_id=601482 NC516_RS05920 WP_016265230.1 1176036..1177775(-) (rcrP) [Latilactobacillus sakei strain WiKim0095]
MKLMWRYTIRYKKLLFWNFICVFGFILIELGLPTLLGQIIDKGINRHTVGPVWQYGTLMVVISLIGLVGLIGLAYTGSRL
TTNLTRDIRNDIFKKTMQFSHHEYGEFGVSSLITRTTNDAFQVTQFMVQVLRTGFMTPMMIVASAFMIVRTSLSLSWIVF
AAIPILLVGVVIIGWLSEPMSAEQQKNLDAINLNLRENLTGIRVIRAFVREKFQSMRFRKVNEAYSQSSIKLFTLVALAQ
PGFSFIFNIVFVLIIWQGAVQINTGHLAVGTLIAFIEYIFHVLFSFMLFASVFMMYPRAAVSAERIEKVLNSPVDITDDD
QGIQTTTTQGELAFENVSFAYPGPTESPVIRDVSFKAHPGETVAFIGSTGSGKSTLIQLIPRFFDVTRGQVMIDGYDVRD
YQLKALRQKIGFIPQKAVLFTGTIADNLRYGNPEATDAELWDALTIAQSKTFVAEKPDGLQTYLAEGGNNLSGGQKQRLA
IARAIVRRPDIYVFDDSFSALDYQTDAALRGALKSITKEATVLIVAQRVGTIMNADRIVVLNEGQVVGIGTHKELLKTNE
VYRAIAASQLSKEELNEEY

Nucleotide


Download         Length: 1740 bp        

>NTDB_id=601482 NC516_RS05920 WP_016265230.1 1176036..1177775(-) (rcrP) [Latilactobacillus sakei strain WiKim0095]
ATGAAATTAATGTGGCGCTATACCATTCGCTATAAAAAACTGTTATTTTGGAATTTTATCTGCGTATTTGGGTTTATTTT
AATTGAACTGGGATTACCAACATTATTAGGACAAATTATCGATAAAGGTATCAACCGCCATACGGTCGGGCCGGTTTGGC
AATATGGGACTTTAATGGTCGTCATTTCCCTGATTGGCCTAGTGGGTTTGATCGGCTTAGCCTACACGGGGAGTCGCTTA
ACCACTAATTTAACGCGTGATATCCGGAACGATATCTTTAAAAAAACGATGCAATTTTCACATCATGAATATGGTGAGTT
TGGCGTGTCTTCCTTAATTACTCGGACGACCAACGATGCGTTTCAAGTGACGCAATTCATGGTGCAAGTGTTACGAACGG
GTTTTATGACCCCGATGATGATCGTTGCCAGTGCGTTCATGATTGTGCGGACGAGTCTGTCATTATCATGGATTGTTTTT
GCAGCCATTCCGATTTTATTAGTTGGGGTGGTTATCATTGGTTGGTTATCCGAACCAATGTCTGCAGAACAACAAAAAAA
CTTAGATGCAATCAATTTAAACTTACGTGAAAATTTAACTGGGATTCGGGTTATTCGCGCATTTGTGCGTGAAAAATTCC
AGAGTATGCGTTTTAGAAAAGTTAATGAAGCCTACAGTCAGAGTTCAATCAAACTCTTTACATTAGTAGCCCTCGCACAA
CCTGGCTTTTCATTTATCTTCAATATTGTGTTCGTGTTAATCATTTGGCAAGGGGCGGTTCAAATTAATACCGGTCACTT
AGCAGTGGGGACGTTAATCGCCTTTATTGAATACATTTTCCATGTACTATTTTCATTCATGCTCTTTGCGAGTGTCTTCA
TGATGTACCCTAGAGCGGCTGTTTCAGCTGAACGGATTGAAAAAGTCCTTAATTCACCCGTAGATATTACGGATGATGAT
CAGGGGATTCAAACTACGACTACCCAAGGCGAATTGGCTTTTGAAAATGTGTCGTTTGCTTATCCTGGTCCGACAGAAAG
TCCGGTCATTCGGGATGTCAGTTTTAAAGCCCATCCTGGTGAAACTGTCGCCTTCATCGGTAGTACAGGGAGTGGTAAAT
CAACCTTAATTCAGTTGATTCCACGCTTTTTCGATGTGACGCGGGGGCAAGTGATGATTGATGGTTACGATGTTCGTGAT
TACCAATTGAAAGCATTACGCCAAAAAATTGGTTTTATTCCCCAAAAGGCGGTCCTCTTTACCGGCACGATTGCGGATAA
CTTGCGCTATGGTAATCCGGAAGCGACGGATGCTGAGTTATGGGATGCTTTAACGATTGCTCAATCCAAAACATTCGTGG
CGGAAAAACCAGACGGTCTCCAAACTTATTTGGCTGAAGGTGGTAACAACTTATCAGGTGGTCAAAAGCAACGACTAGCG
ATTGCCAGAGCAATTGTTCGTCGCCCAGACATCTACGTCTTTGACGATAGCTTTTCAGCCTTGGATTACCAAACAGACGC
AGCATTACGAGGCGCTTTAAAATCGATTACGAAAGAGGCAACCGTCTTAATTGTCGCCCAACGTGTGGGGACGATTATGA
ATGCAGATCGGATTGTCGTCTTAAATGAAGGACAAGTTGTGGGCATCGGTACCCACAAAGAATTACTTAAAACAAATGAG
GTTTACCGGGCCATTGCCGCCTCACAGTTGTCAAAGGAGGAGCTCAATGAAGAATATTAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(18-283)

ABC transporter (ABC_tran)

(351-497)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.816

100

0.415