Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   K6752_RS14540 Genome accession   NZ_CP082315
Coordinates   3111802..3112527 (+) Length   241 a.a.
NCBI ID   WP_025768308.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain ZLV3     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3106802..3117527
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6752_RS14525 (K6752_14455) - 3107935..3110256 (+) 2322 WP_005379317.1 Tex family protein -
  K6752_RS14530 (K6752_14460) - 3110361..3110825 (-) 465 WP_005379316.1 hypothetical protein -
  K6752_RS14535 (K6752_14465) bioH 3110950..3111717 (-) 768 WP_005384724.1 pimeloyl-ACP methyl ester esterase BioH -
  K6752_RS14540 (K6752_14470) comF 3111802..3112527 (+) 726 WP_025768308.1 amidophosphoribosyltransferase Machinery gene
  K6752_RS14545 (K6752_14475) nfuA 3112625..3113209 (+) 585 WP_005379313.1 Fe-S biogenesis protein NfuA -
  K6752_RS14550 (K6752_14480) nudE 3113386..3113955 (+) 570 WP_005379309.1 ADP compounds hydrolase NudE -
  K6752_RS14555 (K6752_14485) cysQ 3114000..3114827 (+) 828 WP_005379308.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  K6752_RS14560 (K6752_14490) - 3115120..3115881 (-) 762 WP_062730773.1 type II secretion system protein N -
  K6752_RS14565 (K6752_14495) - 3115883..3116374 (-) 492 WP_005383002.1 type II secretion system protein M -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27785.04 Da        Isoelectric Point: 9.5795

>NTDB_id=601348 K6752_RS14540 WP_025768308.1 3111802..3112527(+) (comF) [Vibrio alginolyticus strain ZLV3]
MLSHHWQNIMHRVLSSQCGLCRFPIQTPSHTNTLRWCEHCLKYLTPVKRCQRCGLSLQKEEMSTDSMCGECLSKPPPWQR
LYTLGDYDFPLSREVQRFKDHGESWHVKALTEQLAQRITTPAPIITSVPLHWQRYLRRGFNQSDVLARHLAKQLQTNFDA
KVFRRVKLAQSQRGNTKTSREQNLKGAFILNKQPHSSHVAIVDDVVTTGSTVRQLCHLLLEVGVESIDIYCICRTPAPRS
L

Nucleotide


Download         Length: 726 bp        

>NTDB_id=601348 K6752_RS14540 WP_025768308.1 3111802..3112527(+) (comF) [Vibrio alginolyticus strain ZLV3]
ATGTTATCTCATCACTGGCAAAACATCATGCATCGCGTATTGAGCAGTCAATGCGGCCTGTGTCGGTTCCCTATTCAAAC
ACCAAGCCACACAAATACTCTGCGCTGGTGCGAGCACTGTTTAAAATACCTAACTCCGGTAAAACGATGTCAACGCTGCG
GTTTATCATTACAGAAAGAAGAAATGAGTACGGATAGTATGTGTGGTGAATGTCTTTCAAAGCCACCGCCATGGCAAAGG
CTGTACACGTTAGGCGATTACGACTTTCCCCTTTCACGGGAAGTACAACGCTTTAAAGATCACGGAGAGTCTTGGCATGT
AAAAGCATTAACCGAGCAACTGGCACAGCGCATCACCACGCCAGCTCCAATCATTACCAGTGTGCCATTGCACTGGCAGC
GTTACCTGCGCCGGGGTTTTAATCAAAGTGATGTTTTAGCCCGACACCTCGCCAAGCAATTGCAGACTAATTTTGATGCG
AAGGTCTTTCGTCGAGTAAAGCTCGCCCAATCACAGCGTGGTAATACCAAAACAAGCCGTGAACAAAACTTAAAAGGCGC
GTTTATTCTCAATAAGCAACCTCACTCTTCCCATGTTGCCATCGTCGATGATGTAGTCACCACAGGCAGTACCGTCCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAAGCATCGATATTTACTGCATCTGCAGAACACCTGCTCCTCGTTCT
CTCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(145-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

71.369

100

0.714
  comF Vibrio cholerae strain A1552

47.5

99.585

0.473