Detailed information NTG0060128

Bioinformatically predicted

Overview

• Name: rarA
• Type: Machinery gene
• Locus tag: K6J73_RS07975
• Genome accession: NZ_AP018780
• Coordinates: 1603338..1604678 (-)
• Length: 446 a.a.
• NCBI ID: WP_221252954.1
• Uniprot ID: -
• Organism: Haemophilus influenzae strain CHBN-IV-1 isolate 13H36
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1598338..1609678

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
K6J73_RS07955 (CHBNIV1_15140)	-	1598528..1599895 (+)	1368	WP_048954413.1	AAA family ATPase	-
K6J73_RS07960 (CHBNIV1_15150)	-	1599903..1600466 (+)	564	WP_221252953.1	hypothetical protein	-
K6J73_RS07965 (CHBNIV1_15160)	dcm	1600875..1602098 (+)	1224	WP_038439946.1	DNA (cytosine-5-)-methyltransferase	-
K6J73_RS07970 (CHBNIV1_15170)	-	1602108..1603250 (+)	1143	WP_005687705.1	hypothetical protein	-
K6J73_RS07975 (CHBNIV1_15180)	rarA	1603338..1604678 (-)	1341	WP_221252954.1	replication-associated recombination protein A	Machinery gene
K6J73_RS07980 (CHBNIV1_15190)	lolA	1604739..1605356 (-)	618	WP_005664565.1	outer membrane lipoprotein chaperone LolA	-
K6J73_RS07985 (CHBNIV1_15200)	-	1605374..1608139 (-)	2766	WP_221252955.1	DNA translocase FtsK	-
K6J73_RS07990 (CHBNIV1_15210)	lrp	1608141..1608620 (-)	480	WP_005664572.1	leucine-responsive transcriptional regulator Lrp	-

Sequence

Protein

• Length: 446 a.a.
• Molecular weight: 50269.17 Da
• Isoelectric Point: 6.3312

>NTDB_id=60128 K6J73_RS07975 WP_221252954.1 1603338..1604678(-) (rarA) [Haemophilus influenzae strain CHBN-IV-1 isolate 13H36]
MSNLNFDFAENDFRPLAAKMRPTSLEQYFGQSHLIGEGKPLRKAIQAGHIHSMILWGPPGTGKTTLAEIIAQRINAEVER
ISAVTSGIKEIREAIDRAKQNRLSDRKTILFVDEVHRFNKSQQDAFLPHIEDGTVIFIGATTENPSFELNNALLSRARMY
VLKSLTTAEIEQVLQQAVEDPERGLGKERLILEENLLQVLAEYVNGDARLALNCLELMVDMADEMENGKKIDRTLLKEVL
GERQARFDKQGDRFYDLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCF
TRVGAYEGERAIAQAIIYLAVAPKSNAVYTAFNTAKQQAKDLPDYDVPPHLRNAPTNLMKELGYGAEYRYAHDEPNAYAA
GENYFPPELKDTQYYFPTNRGMEIQIKEKLERLREQDKSAVKKRYK

Nucleotide

• Length: 1341 bp

>NTDB_id=60128 K6J73_RS07975 WP_221252954.1 1603338..1604678(-) (rarA) [Haemophilus influenzae strain CHBN-IV-1 isolate 13H36]
ATGTCTAACCTCAATTTTGATTTTGCCGAAAATGATTTTCGCCCACTGGCGGCCAAGATGCGTCCAACAAGTCTAGAACA
ATATTTTGGGCAAAGCCATTTAATTGGCGAGGGCAAGCCACTGCGAAAAGCTATCCAAGCTGGCCATATTCATTCAATGA
TTTTGTGGGGCCCACCAGGTACGGGGAAAACAACCCTTGCAGAAATCATAGCACAACGTATTAATGCGGAAGTAGAGCGA
ATTTCTGCGGTGACGAGTGGTATCAAAGAAATTCGTGAAGCGATTGATCGTGCAAAACAAAATCGTCTTTCGGATCGTAA
AACTATCTTATTTGTGGATGAAGTCCATCGTTTTAATAAAAGCCAGCAAGATGCATTTTTACCGCACATTGAAGACGGAA
CCGTTATTTTTATTGGGGCGACAACAGAAAATCCCTCTTTTGAGCTAAATAATGCATTGCTTTCTCGTGCCCGCATGTAT
GTGCTGAAATCACTCACAACGGCTGAAATTGAACAAGTTTTGCAGCAAGCTGTAGAAGATCCTGAACGAGGATTGGGTAA
AGAGCGGTTAATTTTAGAAGAGAATTTACTGCAAGTGCTTGCCGAATATGTTAATGGGGATGCGCGATTAGCCTTGAATT
GCCTCGAATTAATGGTGGATATGGCAGATGAAATGGAAAATGGAAAGAAAATTGACCGCACTTTATTAAAAGAAGTCTTA
GGCGAACGTCAAGCGAGATTTGATAAACAAGGTGATCGTTTCTATGATTTAATTTCTGCGCTACATAAATCTGTTCGAGG
TTCTGCTCCAGACGCTGCACTGTATTGGTATGCAAGAATTTTAACGGCAGGTGGCGATCCTTTATATGTCGCGCGCCGAT
TACTTGCCATTGCTTCAGAAGATGTGGGAAATGCAGATCCTCGTGCTATGCAAGTTGCATTGGCTGCTTGGGATTGCTTT
ACTCGAGTGGGGGCTTATGAAGGAGAGCGAGCCATCGCTCAAGCCATTATATATCTCGCAGTAGCGCCAAAAAGTAATGC
GGTTTATACGGCGTTTAACACCGCGAAACAGCAAGCGAAAGATTTGCCAGATTACGATGTTCCACCACATTTACGCAATG
CGCCGACTAATTTAATGAAAGAGCTTGGCTATGGTGCTGAATATCGTTATGCTCACGATGAACCTAACGCTTATGCGGCA
GGCGAAAATTATTTCCCACCTGAATTAAAAGATACTCAATATTATTTTCCGACAAATAGAGGTATGGAAATTCAGATTAA
GGAAAAACTAGAACGATTACGTGAGCAAGATAAAAGTGCGGTGAAAAAACGGTATAAATAA

Domains

Predicted by InterProScan.

• MgsA AAA+ ATPase C terminal (MgsA_C) (267-433)

• ATPase family associated with various cellular activities (AAA) (AAA) (53-159)

• AAA C-terminal domain (AAA_assoc_2) (188-266)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rarA	Bacillus subtilis subsp. subtilis str. 168	39.243	94.843	0.372