Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   K6749_RS00680 Genome accession   NZ_CP082310
Coordinates   150176..150901 (-) Length   241 a.a.
NCBI ID   WP_054729114.1    Uniprot ID   A0A1W6TMM7
Organism   Vibrio alginolyticus strain HYV1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 145176..155901
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6749_RS00655 (K6749_00655) - 146319..146810 (+) 492 WP_047103746.1 type II secretion system protein M -
  K6749_RS00660 (K6749_00660) - 146812..147573 (+) 762 WP_238970158.1 type II secretion system protein N -
  K6749_RS00665 (K6749_00665) cysQ 147876..148703 (-) 828 WP_005379308.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  K6749_RS00670 (K6749_00670) nudE 148748..149317 (-) 570 WP_005379309.1 ADP compounds hydrolase NudE -
  K6749_RS00675 (K6749_00675) nfuA 149494..150078 (-) 585 WP_005379313.1 Fe-S biogenesis protein NfuA -
  K6749_RS00680 (K6749_00680) comF 150176..150901 (-) 726 WP_054729114.1 amidophosphoribosyltransferase Machinery gene
  K6749_RS00685 (K6749_00685) bioH 150986..151753 (+) 768 WP_182015998.1 pimeloyl-ACP methyl ester esterase BioH -
  K6749_RS00690 (K6749_00690) - 151878..152342 (+) 465 WP_213883693.1 ATP-dependent Lon protease -
  K6749_RS00695 (K6749_00695) - 152430..154748 (-) 2319 WP_213883691.1 Tex family protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27795.07 Da        Isoelectric Point: 9.7558

>NTDB_id=601216 K6749_RS00680 WP_054729114.1 150176..150901(-) (comF) [Vibrio alginolyticus strain HYV1]
MLSHHWQNIMHRVLSSQCGLCRFPIQTPSHTNTLRWCEHCLKYLTPVKRCQRCGLSLQKEEMSTDSICGECLSKPPPWQR
LYTLGDYDFPLSREVQRFKDHGESWHVKALTEQLAQRITTPAPIITSVPLHWQRYLRRGFNQSDVLARHLAKQLQTNFDA
KVFRRVKLAQSQRGNTKTSREQNLKGAFILNKRPHSSHVAIVDDVVTTGSTVRQLCHLLLEVGVESIDIYCICRTPAPRS
L

Nucleotide


Download         Length: 726 bp        

>NTDB_id=601216 K6749_RS00680 WP_054729114.1 150176..150901(-) (comF) [Vibrio alginolyticus strain HYV1]
ATGTTATCTCATCACTGGCAAAACATCATGCATCGCGTATTGAGCAGTCAATGCGGCCTGTGTCGGTTCCCTATTCAAAC
ACCAAGCCACACAAATACTCTGCGCTGGTGCGAGCACTGTTTAAAATACCTAACTCCGGTAAAACGATGTCAACGCTGCG
GTTTATCATTACAGAAAGAAGAAATGAGTACGGATAGTATTTGTGGTGAATGTCTTTCAAAGCCACCGCCATGGCAAAGG
CTATACACGTTAGGCGATTACGACTTTCCCCTTTCACGGGAAGTACAACGCTTTAAAGATCACGGAGAGTCTTGGCATGT
AAAAGCATTAACCGAGCAACTGGCACAGCGCATCACCACGCCAGCTCCAATCATTACCAGTGTGCCATTGCACTGGCAGC
GTTACCTGCGCCGGGGTTTTAATCAAAGTGATGTTTTAGCCCGACACCTCGCCAAGCAATTGCAGACTAATTTTGATGCG
AAGGTCTTTCGTCGAGTAAAGCTCGCCCAATCACAGCGTGGTAATACCAAAACAAGCCGTGAACAAAACTTAAAAGGCGC
GTTTATTCTCAATAAGCGCCCTCACTCTTCCCATGTTGCCATCGTCGATGATGTAGTCACCACAGGCAGTACCGTCCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAAGCATCGATATTTACTGCATCTGCAGAACACCTGCTCCTCGTTCT
CTCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(145-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1W6TMM7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

71.369

100

0.714
  comF Vibrio cholerae strain A1552

47.5

99.585

0.473