Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   K6745_RS00685 Genome accession   NZ_CP082303
Coordinates   150002..150727 (-) Length   241 a.a.
NCBI ID   WP_025768308.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain FJV2     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 145002..155727
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6745_RS00660 (K6745_00660) - 146155..146646 (+) 492 WP_005383002.1 type II secretion system protein M -
  K6745_RS00665 (K6745_00665) - 146648..147409 (+) 762 WP_017635007.1 type II secretion system protein N -
  K6745_RS00670 (K6745_00670) cysQ 147702..148529 (-) 828 WP_005379308.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  K6745_RS00675 (K6745_00675) nudE 148574..149143 (-) 570 WP_025768307.1 ADP compounds hydrolase NudE -
  K6745_RS00680 (K6745_00680) nfuA 149320..149904 (-) 585 WP_005379313.1 Fe-S biogenesis protein NfuA -
  K6745_RS00685 (K6745_00685) comF 150002..150727 (-) 726 WP_025768308.1 amidophosphoribosyltransferase Machinery gene
  K6745_RS00690 (K6745_00690) bioH 150812..151579 (+) 768 WP_005384724.1 pimeloyl-ACP methyl ester esterase BioH -
  K6745_RS00695 (K6745_00695) - 151704..152168 (+) 465 WP_005379316.1 hypothetical protein -
  K6745_RS00700 (K6745_00700) - 152273..154594 (-) 2322 WP_025768309.1 Tex family protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27785.04 Da        Isoelectric Point: 9.5795

>NTDB_id=601123 K6745_RS00685 WP_025768308.1 150002..150727(-) (comF) [Vibrio alginolyticus strain FJV2]
MLSHHWQNIMHRVLSSQCGLCRFPIQTPSHTNTLRWCEHCLKYLTPVKRCQRCGLSLQKEEMSTDSMCGECLSKPPPWQR
LYTLGDYDFPLSREVQRFKDHGESWHVKALTEQLAQRITTPAPIITSVPLHWQRYLRRGFNQSDVLARHLAKQLQTNFDA
KVFRRVKLAQSQRGNTKTSREQNLKGAFILNKQPHSSHVAIVDDVVTTGSTVRQLCHLLLEVGVESIDIYCICRTPAPRS
L

Nucleotide


Download         Length: 726 bp        

>NTDB_id=601123 K6745_RS00685 WP_025768308.1 150002..150727(-) (comF) [Vibrio alginolyticus strain FJV2]
ATGTTATCTCATCACTGGCAAAACATCATGCATCGCGTATTGAGCAGTCAATGCGGCCTGTGTCGGTTCCCTATTCAAAC
ACCAAGCCACACAAATACTCTGCGCTGGTGCGAGCACTGTTTAAAATACCTCACTCCGGTAAAACGATGTCAACGCTGCG
GTTTATCATTACAGAAAGAAGAAATGAGTACGGATAGTATGTGTGGTGAATGTCTTTCAAAGCCACCGCCATGGCAAAGG
CTGTACACGTTAGGCGATTACGACTTTCCCCTTTCACGGGAAGTACAACGCTTTAAAGATCACGGAGAGTCTTGGCATGT
AAAAGCATTAACCGAGCAACTGGCACAGCGCATCACCACGCCAGCTCCAATCATTACCAGTGTGCCATTGCACTGGCAGC
GTTACCTGCGCCGGGGTTTTAATCAAAGTGATGTTTTAGCCCGACACCTCGCCAAGCAATTGCAGACTAATTTTGATGCG
AAGGTCTTTCGTCGAGTAAAGCTCGCCCAATCACAGCGTGGTAATACCAAAACAAGCCGTGAACAAAACTTAAAAGGCGC
GTTTATTCTCAATAAGCAACCTCACTCTTCCCATGTTGCCATCGTCGATGATGTAGTCACCACAGGCAGTACCGTCCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAAGCATCGATATTTACTGCATCTGCAGAACACCTGCTCCTCGTTCT
CTCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(145-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

71.369

100

0.714
  comF Vibrio cholerae strain A1552

47.5

99.585

0.473