Detailed information NTG0601028

Bioinformatically predicted

Overview

• Name: codY
• Type: Regulator
• Locus tag: BAJP3144_RS08170
• Genome accession: NZ_CP082283
• Coordinates: 1632149..1632928 (+)
• Length: 259 a.a.
• NCBI ID: WP_160182664.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain JP3144
• Function: repression of comK (predicted from homology) Competence regulation

Genomic Context

Location: 1627149..1637928

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BAJP3144_RS08150 (BAJP3144_08150)	trmFO	1627836..1629143 (+)	1308	WP_061862190.1	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	-
BAJP3144_RS08155 (BAJP3144_08155)	xerC	1629213..1630130 (+)	918	WP_007409774.1	tyrosine recombinase XerC	-
BAJP3144_RS08160 (BAJP3144_08160)	hslV	1630146..1630691 (+)	546	WP_014417767.1	ATP-dependent protease subunit HslV	-
BAJP3144_RS08165 (BAJP3144_08165)	hslU	1630708..1632111 (+)	1404	WP_061862191.1	HslU--HslV peptidase ATPase subunit	-
BAJP3144_RS08170 (BAJP3144_08170)	codY	1632149..1632928 (+)	780	WP_160182664.1	GTP-sensing pleiotropic transcriptional regulator CodY	Regulator
BAJP3144_RS08175 (BAJP3144_08175)	flgB	1633282..1633671 (+)	390	WP_003154260.1	flagellar basal body rod protein FlgB	-
BAJP3144_RS08180 (BAJP3144_08180)	flgC	1633671..1634123 (+)	453	WP_015239851.1	flagellar basal body rod protein FlgC	-
BAJP3144_RS08185 (BAJP3144_08185)	fliE	1634134..1634454 (+)	321	WP_007409777.1	flagellar hook-basal body complex protein FliE	-
BAJP3144_RS08190 (BAJP3144_08190)	fliF	1634497..1636107 (+)	1611	WP_160182665.1	flagellar basal-body MS-ring/collar protein FliF	-
BAJP3144_RS08195 (BAJP3144_08195)	fliG	1636120..1637136 (+)	1017	WP_003154256.1	flagellar motor switch protein FliG	-
BAJP3144_RS08200 (BAJP3144_08200)	fliH	1637129..1637884 (+)	756	WP_222893509.1	flagellar assembly protein FliH	-

Sequence

Protein

• Length: 259 a.a.
• Molecular weight: 29098.32 Da
• Isoelectric Point: 4.6062

>NTDB_id=601028 BAJP3144_RS08170 WP_160182664.1 1632149..1632928(+) (codY) [Bacillus amyloliquefaciens strain JP3144]
MVLLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENERMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide

• Length: 780 bp

>NTDB_id=601028 BAJP3144_RS08170 WP_160182664.1 1632149..1632928(+) (codY) [Bacillus amyloliquefaciens strain JP3144]
ATGGTTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGAACGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATCCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCAGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAACTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACA
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

• CodY helix-turn-helix domain (HTH_CodY) (198-255)

• CodY GAF-like domain (CodY) (3-178)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
codY	Bacillus subtilis subsp. subtilis str. 168	98.456	100	0.985
codY	Lactococcus lactis subsp. lactis strain DGCC12653	47.638	98.069	0.467