Detailed information NTG0600874

Bioinformatically predicted

Overview

• Name: recD2
• Type: Machinery gene
• Locus tag: K7B13_RS12700
• Genome accession: NZ_CP082278
• Coordinates: 2503658..2506036 (-)
• Length: 792 a.a.
• NCBI ID: WP_115997690.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain 35M
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2498658..2511036

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
K7B13_RS12665 (K7B13_12665)	-	2499736..2500464 (+)	729	WP_115997689.1	amino acid ABC transporter ATP-binding protein	-
K7B13_RS12670 (K7B13_12670)	-	2500488..2501315 (+)	828	WP_013353014.1	transporter substrate-binding domain-containing protein	-
K7B13_RS12675 (K7B13_12675)	-	2501373..2502023 (+)	651	WP_065981957.1	amino acid ABC transporter permease	-
K7B13_RS12680 (K7B13_12680)	-	2502042..2502698 (+)	657	WP_065522692.1	amino acid ABC transporter permease	-
K7B13_RS12685 (K7B13_12685)	-	2502732..2502863 (-)	132	WP_003152741.1	YrzQ family protein	-
K7B13_RS12690 (K7B13_12690)	-	2502885..2503076 (-)	192	WP_003152738.1	hypothetical protein	-
K7B13_RS12695 (K7B13_12695)	-	2503089..2503547 (-)	459	WP_065981959.1	hypothetical protein	-
K7B13_RS12700 (K7B13_12700)	recD2	2503658..2506036 (-)	2379	WP_115997690.1	ATP-dependent RecD-like DNA helicase	Machinery gene
K7B13_RS12705 (K7B13_12705)	-	2506055..2506675 (-)	621	WP_088030693.1	lipopolysaccharide assembly protein LapB	-
K7B13_RS12710 (K7B13_12710)	mnmA	2506763..2507878 (-)	1116	WP_065981961.1	tRNA 2-thiouridine(34) synthase MnmA	-
K7B13_RS12715 (K7B13_12715)	-	2507915..2509054 (-)	1140	WP_065981962.1	cysteine desulfurase family protein	-
K7B13_RS12720 (K7B13_12720)	cymR	2509073..2509489 (-)	417	WP_013353022.1	cysteine metabolism transcriptional regulator CymR	-
K7B13_RS12725 (K7B13_12725)	-	2509684..2510952 (+)	1269	WP_065981963.1	replication-associated recombination protein A	-

Sequence

Protein

• Length: 792 a.a.
• Molecular weight: 88274.09 Da
• Isoelectric Point: 5.0709

>NTDB_id=600874 K7B13_RS12700 WP_115997690.1 2503658..2506036(-) (recD2) [Bacillus amyloliquefaciens strain 35M]
MDQLKIEEQPYVKGVIHTVIYHNDTNLYTVLKVKVAETSEAIEDKVVSVTGYFPLLQEDETYTFYGKTATHPKFGLQFQA
EHFKKEIPTTKEGIIHYLSSDLFEGIGKKTAEEIVKKLGDGALNKILADASVLYDVPKMSKKKADKLAGELQRHQGLEQI
MISLNQYGFGPQLSMKIYQAYETETLEKIQENPYQLVKDVEGIGFVKADELGGKMGLSGNHPERIKAAILYTIESTCLSE
GHTYIDTKQLIINTQTLLNQSAGGGRVTEMDAAEGIIALGESKDIVIEGERCYFPSLFYAEQNVAKRVLDIAAQTEYADQ
FPESEFLLALGELEERMKVQYAPSQKDAIQKALSSPMLLLTGGPGTGKTTVIKGIVELYSELHGVSLDPGDYKKDEAFPV
LLAAPTGRAAKRMSESTGLPAVTIHRLLGWNGAEGFTYNEDQPIEGKLIIIDEASMLDIWLASHLFKALPKHIQLIVVGD
EDQLPSVGPGQVLRDLLASEVLPTVRLTDIYRQAEGSSIVELAHDMKKGLLPKGLTAPTKDRSFIRCNSAQIKEVVDQVV
SNALKKGYTSRDIQVLAPMYRGKAGINELNMLLQDIMNPPKEKRRELKFGDVVYRTGDKILQLVNQPENNVFNGDIGEIV
SIFYAKENTEKEDMVVVSFDGNEITFTKKDFSQFTHAYCCSIHKSQGSEFPIVVLPVVKGYYRMLRRNLLYTAITRAKKF
LILCGEEEALEWGVKNNDATVRQTSLKNRLTEQTEEMDAELAALQKELPFSVYDANIGMEGITPFDFMEEKA

Nucleotide

• Length: 2379 bp

>NTDB_id=600874 K7B13_RS12700 WP_115997690.1 2503658..2506036(-) (recD2) [Bacillus amyloliquefaciens strain 35M]
GTGGATCAGCTGAAAATCGAGGAACAACCGTATGTAAAAGGCGTCATTCATACGGTCATTTACCACAATGACACCAACCT
GTATACAGTGCTGAAAGTCAAGGTTGCAGAAACGTCTGAGGCGATCGAAGACAAGGTCGTATCCGTAACGGGCTACTTCC
CTCTGCTGCAAGAAGATGAGACTTACACATTTTACGGAAAAACCGCCACACATCCCAAGTTCGGCCTGCAATTCCAGGCT
GAACACTTTAAGAAAGAAATTCCGACCACAAAAGAAGGGATCATTCACTATTTATCAAGCGATCTGTTTGAAGGAATCGG
AAAAAAAACGGCGGAAGAAATCGTCAAAAAGCTCGGAGACGGCGCGCTGAATAAAATTCTGGCTGATGCGTCGGTGCTTT
ACGATGTGCCGAAAATGTCCAAAAAGAAAGCGGATAAGCTTGCCGGAGAGCTGCAGCGGCATCAGGGGCTGGAGCAGATT
ATGATTTCTCTTAACCAATACGGTTTCGGACCTCAGCTTTCCATGAAAATTTATCAGGCTTACGAAACGGAAACCCTTGA
GAAAATTCAGGAGAATCCTTATCAGCTTGTAAAGGACGTGGAAGGCATCGGCTTTGTAAAGGCCGACGAGCTGGGCGGAA
AAATGGGTCTGTCAGGAAACCATCCCGAGCGGATCAAAGCGGCTATCTTATATACGATTGAATCGACCTGCCTTTCAGAA
GGTCATACGTACATAGACACAAAGCAGCTGATTATCAATACGCAAACGCTTCTGAATCAGTCAGCTGGCGGAGGCCGCGT
CACGGAAATGGATGCGGCTGAAGGCATCATCGCCCTCGGAGAGAGTAAGGATATCGTCATAGAAGGAGAACGCTGCTATT
TTCCGTCTTTGTTTTACGCGGAACAAAATGTCGCAAAACGCGTGCTCGATATTGCGGCTCAGACGGAGTATGCCGATCAA
TTTCCTGAATCGGAATTTCTGCTTGCGCTCGGCGAACTGGAAGAACGGATGAAAGTTCAATACGCTCCGAGCCAAAAGGA
TGCTATTCAAAAAGCGCTGTCGTCGCCGATGCTTTTACTGACCGGGGGACCGGGTACGGGAAAAACGACCGTTATCAAAG
GAATCGTGGAATTATACAGTGAACTCCACGGCGTATCGCTTGATCCCGGTGATTATAAAAAAGACGAGGCGTTTCCGGTG
CTGCTTGCCGCGCCGACCGGAAGAGCCGCAAAACGGATGAGTGAATCTACGGGTCTGCCGGCTGTTACGATTCACAGGCT
GCTCGGCTGGAATGGCGCTGAAGGCTTTACCTATAATGAGGATCAGCCGATTGAAGGGAAACTGATCATTATAGACGAAG
CGAGTATGCTCGATATTTGGCTCGCCAGCCATTTGTTTAAGGCGCTCCCTAAGCACATTCAGCTCATCGTCGTCGGTGAT
GAAGACCAGCTTCCTTCCGTGGGGCCGGGGCAGGTGCTGAGAGACCTTTTGGCTTCTGAGGTGCTGCCGACCGTGCGCCT
GACAGATATTTACCGTCAGGCGGAAGGGTCATCCATCGTCGAACTTGCCCATGATATGAAAAAAGGACTGCTTCCAAAAG
GACTGACCGCGCCGACAAAGGACCGCTCGTTTATCCGCTGTAATTCTGCACAGATTAAAGAAGTCGTCGATCAAGTCGTT
TCAAACGCGTTAAAGAAGGGATATACCTCCAGAGATATTCAAGTGCTTGCGCCGATGTACAGGGGAAAAGCGGGAATTAA
CGAGCTGAATATGCTTCTTCAAGACATCATGAATCCGCCGAAAGAAAAAAGGCGGGAGCTGAAATTCGGAGATGTCGTCT
ACAGAACGGGCGATAAAATATTGCAGCTTGTCAACCAGCCGGAAAACAATGTGTTTAACGGTGATATCGGCGAAATCGTG
TCCATTTTTTATGCCAAAGAAAATACGGAAAAAGAAGACATGGTAGTCGTCTCGTTTGACGGCAATGAAATCACCTTTAC
GAAAAAGGATTTCAGCCAGTTTACCCATGCTTACTGCTGTTCCATCCATAAGTCTCAGGGAAGTGAATTTCCGATTGTCG
TCCTGCCTGTCGTCAAAGGCTACTATCGTATGCTTAGGAGAAATCTCCTTTATACCGCCATTACAAGGGCCAAGAAATTT
CTGATTCTTTGCGGAGAAGAAGAAGCGCTTGAATGGGGTGTCAAAAACAATGATGCCACCGTCAGACAGACGTCGCTTAA
AAACAGGCTCACAGAGCAGACTGAAGAGATGGATGCAGAACTGGCCGCTCTGCAAAAAGAACTGCCGTTCAGTGTATATG
ATGCGAACATCGGAATGGAAGGCATTACGCCGTTTGACTTTATGGAAGAAAAAGCGTAA

Domains

Predicted by InterproScan.

• AAA domain (AAA_30) (341-548)

• Helix-hairpin-helix containing domain (HHH_RecD2) (154-244)

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (589-659)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (676-724)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD2	Bacillus subtilis subsp. subtilis str. 168	88.748	99.874	0.886