Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   K7B13_RS07815 Genome accession   NZ_CP082278
Coordinates   1545401..1546180 (+) Length   259 a.a.
NCBI ID   WP_013352252.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain 35M     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1540401..1551180
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K7B13_RS07795 (K7B13_07795) trmFO 1541088..1542395 (+) 1308 WP_013352248.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  K7B13_RS07800 (K7B13_07800) xerC 1542465..1543382 (+) 918 WP_013352249.1 tyrosine recombinase XerC -
  K7B13_RS07805 (K7B13_07805) hslV 1543398..1543943 (+) 546 WP_013352250.1 ATP-dependent protease subunit HslV -
  K7B13_RS07810 (K7B13_07810) hslU 1543960..1545363 (+) 1404 WP_065981442.1 HslU--HslV peptidase ATPase subunit -
  K7B13_RS07815 (K7B13_07815) codY 1545401..1546180 (+) 780 WP_013352252.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  K7B13_RS07820 (K7B13_07820) flgB 1546535..1546924 (+) 390 WP_013352253.1 flagellar basal body rod protein FlgB -
  K7B13_RS07825 (K7B13_07825) flgC 1546924..1547376 (+) 453 WP_013352254.1 flagellar basal body rod protein FlgC -
  K7B13_RS07830 (K7B13_07830) fliE 1547387..1547707 (+) 321 WP_212101352.1 flagellar hook-basal body complex protein FliE -
  K7B13_RS07835 (K7B13_07835) fliF 1547750..1549360 (+) 1611 WP_212101355.1 flagellar basal-body MS-ring/collar protein FliF -
  K7B13_RS07840 (K7B13_07840) fliG 1549373..1550389 (+) 1017 WP_013352256.1 flagellar motor switch protein FliG -
  K7B13_RS07845 (K7B13_07845) fliH 1550382..1551137 (+) 756 WP_212101358.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29028.23 Da        Isoelectric Point: 4.6017

>NTDB_id=600856 K7B13_RS07815 WP_013352252.1 1545401..1546180(+) (codY) [Bacillus amyloliquefaciens strain 35M]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=600856 K7B13_RS07815 WP_013352252.1 1545401..1546180(+) (codY) [Bacillus amyloliquefaciens strain 35M]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATCGAAAATGACCGCATGAAAAAAATGCTGGAAGACCGCCAGTTCCCGGAAGAGTACACGAAAAATCTGTTC
AACGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCATTTCCTGTTGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACGACGATTGTCCCGATTATCGGCGGAGGCGAGCGTCTGGGCACATTGATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAAGCGCGAAGCAAAGCAGTGGTTCAAATGGCAATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAACTTGACGGAAACGAAGGCTTGCTTGTTGCAAGTAAAATTGCGGACCGTGTGGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCCGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACT
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCACATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.614

100

0.996
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467