Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   K4A81_RS08490 Genome accession   NZ_CP082262
Coordinates   1686687..1687466 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain BIM B-454D     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1681687..1692466
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K4A81_RS08470 (K4A81_08470) trmFO 1682374..1683681 (+) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  K4A81_RS08475 (K4A81_08475) xerC 1683751..1684668 (+) 918 WP_007409774.1 tyrosine recombinase XerC -
  K4A81_RS08480 (K4A81_08480) hslV 1684684..1685229 (+) 546 WP_014417767.1 ATP-dependent protease subunit HslV -
  K4A81_RS08485 (K4A81_08485) hslU 1685246..1686649 (+) 1404 WP_061862191.1 HslU--HslV peptidase ATPase subunit -
  K4A81_RS08490 (K4A81_08490) codY 1686687..1687466 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  K4A81_RS08495 (K4A81_08495) flgB 1687820..1688209 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  K4A81_RS08500 (K4A81_08500) flgC 1688209..1688661 (+) 453 WP_015239851.1 flagellar basal body rod protein FlgC -
  K4A81_RS08505 (K4A81_08505) fliE 1688672..1688992 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  K4A81_RS08510 (K4A81_08510) fliF 1689035..1690645 (+) 1611 WP_031303988.1 flagellar basal-body MS-ring/collar protein FliF -
  K4A81_RS08515 (K4A81_08515) fliG 1690658..1691674 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  K4A81_RS08520 (K4A81_08520) fliH 1691667..1692422 (+) 756 WP_222885134.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=600552 K4A81_RS08490 WP_003154263.1 1686687..1687466(+) (codY) [Bacillus velezensis strain BIM B-454D]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=600552 K4A81_RS08490 WP_003154263.1 1686687..1687466(+) (codY) [Bacillus velezensis strain BIM B-454D]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATCACGC
GTTCAGTCATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471