Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   HUR95_RS14625 Genome accession   NZ_CP082237
Coordinates   2847776..2850079 (-) Length   767 a.a.
NCBI ID   WP_007503600.1    Uniprot ID   F5L581
Organism   Caldalkalibacillus thermarum TA2.A1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2842776..2855079
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HUR95_RS14610 (HUR95_14610) - 2845550..2846647 (-) 1098 WP_007503591.1 AI-2E family transporter -
  HUR95_RS14615 (HUR95_14615) - 2846992..2847189 (-) 198 WP_007503595.1 hypothetical protein -
  HUR95_RS14620 (HUR95_14620) - 2847222..2847719 (-) 498 WP_007503598.1 PRC-barrel domain-containing protein -
  HUR95_RS14625 (HUR95_14625) recD2 2847776..2850079 (-) 2304 WP_007503600.1 ATP-dependent RecD-like DNA helicase Machinery gene
  HUR95_RS14630 (HUR95_14630) mnmA 2850105..2851232 (-) 1128 WP_042684541.1 tRNA 2-thiouridine(34) synthase MnmA -
  HUR95_RS14635 (HUR95_14635) - 2851323..2852462 (-) 1140 WP_007503604.1 cysteine desulfurase family protein -
  HUR95_RS14640 (HUR95_14640) cymR 2852499..2852915 (-) 417 WP_007503606.1 cysteine metabolism transcriptional regulator CymR -
  HUR95_RS14645 (HUR95_14645) - 2852857..2853558 (-) 702 WP_007503607.1 YczE/YyaS/YitT family protein -
  HUR95_RS17895 - 2853815..2854498 (-) 684 WP_276517871.1 UPF0236 family transposase-like protein -
  HUR95_RS17900 - 2854563..2854844 (-) 282 WP_276517874.1 UPF0236 family transposase-like protein -

Sequence

Protein


Download         Length: 767 a.a.        Molecular weight: 87584.03 Da        Isoelectric Point: 5.0303

>NTDB_id=600388 HUR95_RS14625 WP_007503600.1 2847776..2850079(-) (recD2) [Caldalkalibacillus thermarum TA2.A1]
MDVIQPSLFDESRPYIKGKLKYEIFHNTDNLYTVSKIKIVEATEDIDDKEMTVVGYYPSLLEGELYTFWGQVKEHPRFGR
QYQVDYFRKELPQGREGVIQYLSSDLFPGIGEKTATRIVDTLGEKAITLILENPDVLQQVPRLSEEQRQLMYRRLLEYQG
LEQIMVKLGEYGIGLSLSIQIYQTYAERAMQVLEDNPYQLIEDIEGIGFKRADAIARAMGIRYDAPERIRAACHYFLWEQ
AEQNGHVYYPLELVIPGVQKWLNKQGEMESGEQEIDQGRIEQQLLELAEEGKLILEDDRLYLPSLFFAEKGFAKKVKQLV
KRRVELPVSHDQFLRALGELEDRLGIQYAESQKQAIEQALHSSLMILTGGPGTGKTTVIKGIVELFAAIYDLPLDPNVYA
QREEPFPFLLVAPTGRAAKRMEESTGLPAFTIHRLLGWKGGQEFDYSEDRPLEGKLLIVDETSMMDQWLANQLFRALPDD
IHVILVGDQDQLPSVGPGQVLRDLLDSGQIPVVELKDVFRQAQDSSIISLAHQIKNGRLQEDITQPKPDRRFFPCSSDQV
VDVVSRVCQSALNKGYTPKDIQVLAPMYRGKAGIDALNEALQQTFNPPAEHKRELKVKDHIFRVGDKVLQLVNNLEQHVF
NGDIGEVTAILLAQETKEQEDQLVVAFEHKEVRYKKSELHQLTLAYCCSIHKSQGSEYPIVVVPVVKSYQRMLRRNLLYT
AITRGKEYLILCGEKDAFDAAIDREEAAIRYTHLKETLQEWLAGNHS

Nucleotide


Download         Length: 2304 bp        

>NTDB_id=600388 HUR95_RS14625 WP_007503600.1 2847776..2850079(-) (recD2) [Caldalkalibacillus thermarum TA2.A1]
ATGGACGTGATTCAACCTTCCCTGTTTGATGAAAGCCGTCCTTACATCAAGGGCAAGCTAAAGTATGAGATTTTCCATAA
CACGGACAACCTGTACACCGTCAGTAAAATCAAAATTGTTGAGGCAACTGAGGATATTGATGACAAAGAAATGACGGTAG
TGGGCTACTATCCTTCTCTCTTGGAAGGGGAACTGTACACCTTTTGGGGACAGGTGAAGGAACATCCCCGTTTTGGACGG
CAGTACCAGGTTGATTATTTTCGCAAAGAACTTCCCCAGGGGCGGGAAGGTGTGATCCAGTATTTATCCAGTGATCTTTT
TCCCGGTATAGGAGAAAAAACAGCCACCCGCATTGTGGATACGCTGGGGGAGAAGGCGATTACGCTGATTTTGGAAAATC
CGGACGTTTTGCAGCAAGTGCCCCGCTTAAGCGAAGAGCAGCGCCAGCTGATGTATCGCAGGTTGTTGGAGTATCAGGGA
TTGGAACAGATTATGGTCAAATTGGGTGAATATGGCATAGGATTGTCCCTGTCCATTCAGATTTATCAAACCTATGCTGA
GCGGGCGATGCAAGTGTTGGAGGATAATCCCTACCAGCTGATTGAGGATATCGAGGGCATTGGTTTCAAACGGGCCGACG
CCATCGCCCGGGCCATGGGCATCCGTTATGATGCACCAGAACGGATCCGGGCTGCCTGCCATTATTTTTTATGGGAGCAG
GCGGAGCAGAATGGCCACGTTTATTATCCCCTTGAGCTGGTGATTCCCGGGGTTCAAAAGTGGCTGAACAAGCAAGGGGA
AATGGAGAGCGGGGAACAAGAGATTGACCAGGGAAGGATTGAACAGCAACTTTTGGAATTGGCCGAAGAGGGGAAGCTTA
TTTTGGAGGATGACCGTTTGTATCTGCCTTCTCTGTTCTTTGCCGAAAAAGGGTTTGCCAAGAAAGTCAAGCAGCTGGTC
AAAAGACGGGTAGAGCTGCCAGTTTCTCATGACCAATTTTTACGTGCCTTGGGAGAATTGGAAGATAGGCTCGGTATCCA
GTATGCGGAGAGCCAGAAACAAGCCATTGAACAAGCTTTGCACAGTTCACTCATGATTTTAACGGGAGGGCCAGGGACTG
GAAAAACCACCGTGATTAAAGGGATTGTGGAGCTCTTTGCAGCGATTTACGACTTGCCCCTTGATCCTAACGTTTATGCC
CAAAGGGAGGAGCCGTTTCCCTTCTTGCTTGTGGCCCCGACTGGCAGGGCCGCTAAACGGATGGAGGAATCCACTGGACT
GCCTGCCTTTACCATTCACCGCTTGCTGGGCTGGAAAGGGGGACAGGAGTTTGATTATTCGGAAGACCGCCCCCTGGAAG
GAAAATTGCTTATCGTTGATGAAACGTCCATGATGGATCAGTGGCTCGCTAACCAACTGTTCCGGGCTCTGCCGGACGAT
ATTCACGTCATTTTGGTGGGGGATCAGGATCAGCTGCCCTCAGTTGGTCCGGGACAGGTGCTGCGCGATTTGTTGGATAG
CGGTCAAATTCCTGTAGTGGAACTGAAGGATGTCTTCCGCCAGGCGCAGGATTCGTCCATCATTAGCCTGGCCCATCAAA
TTAAAAACGGCCGCTTGCAGGAGGATATAACCCAGCCCAAGCCTGACCGGCGCTTTTTTCCCTGCTCCAGCGATCAGGTG
GTGGATGTGGTCTCGCGGGTGTGCCAATCCGCTTTAAACAAAGGATATACACCCAAAGACATTCAGGTCTTGGCGCCCAT
GTACAGGGGGAAAGCCGGGATTGATGCTTTGAACGAAGCGTTACAGCAAACGTTTAACCCACCAGCAGAGCACAAGAGGG
AATTAAAGGTAAAGGATCACATTTTCCGTGTGGGAGACAAAGTGCTCCAGCTGGTTAACAACTTGGAGCAACACGTTTTT
AACGGGGATATCGGGGAAGTGACCGCTATCCTTTTGGCACAGGAGACGAAAGAGCAGGAAGACCAATTGGTGGTGGCTTT
TGAACATAAAGAAGTGCGTTACAAGAAGAGTGAGCTCCATCAGTTGACCCTGGCCTATTGCTGCTCCATTCACAAATCCC
AAGGCAGTGAATACCCCATCGTGGTTGTTCCTGTTGTGAAATCGTACCAGCGGATGTTAAGGCGCAACTTGTTGTACACC
GCCATCACCAGGGGAAAAGAATATTTGATTCTGTGCGGCGAAAAAGACGCCTTTGATGCGGCTATTGACCGGGAGGAGGC
AGCGATCCGCTATACCCACTTAAAAGAAACACTTCAGGAGTGGCTGGCTGGCAATCACTCCTAG

Domains

Predicted by InterproScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(597-667)

AAA domain (AAA_30)

(348-543)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(685-732)

Helix-hairpin-helix containing domain (HHH_RecD2)

(158-248)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F5L581

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

53.805

97.653

0.525