Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   K6J62_RS00265 Genome accession   NZ_AP018779
Coordinates   56037..56720 (-) Length   227 a.a.
NCBI ID   WP_110431768.1    Uniprot ID   -
Organism   Haemophilus influenzae strain CHBN-III-8 isolate 10H15     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 51037..61720
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J62_RS00250 (CHBNIII8_00500) nrdR 51827..52276 (-) 450 WP_005651549.1 transcriptional regulator NrdR -
  K6J62_RS00255 (CHBNIII8_00510) recC 52331..55711 (-) 3381 WP_110431769.1 exodeoxyribonuclease V subunit gamma -
  K6J62_RS00260 (CHBNIII8_00520) comQ 55757..56044 (-) 288 WP_005655928.1 DUF5374 domain-containing protein Machinery gene
  K6J62_RS00265 (CHBNIII8_00530) comP 56037..56720 (-) 684 WP_110431768.1 DUF2572 family protein Machinery gene
  K6J62_RS00270 (CHBNIII8_00540) comO 56717..57436 (-) 720 WP_110431767.1 type II secretion system protein J Machinery gene
  K6J62_RS00275 (CHBNIII8_00550) comN 57436..57948 (-) 513 WP_110431766.1 type II secretion system protein Machinery gene
  K6J62_RS00280 (CHBNIII8_00560) suhB 58148..58951 (+) 804 WP_005631453.1 inositol-1-monophosphatase -
  K6J62_RS00285 (CHBNIII8_00570) nrfE 59060..60967 (+) 1908 WP_110431765.1 heme lyase NrfEFG subunit NrfE -
  K6J62_RS00290 (CHBNIII8_00580) - 60967..61497 (+) 531 WP_005664151.1 DsbE family thiol:disulfide interchange protein -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 25488.29 Da        Isoelectric Point: 9.3068

>NTDB_id=60017 K6J62_RS00265 WP_110431768.1 56037..56720(-) (comP) [Haemophilus influenzae strain CHBN-III-8 isolate 10H15]
MTIQKGIITLTILIFISGLLTAILLLDDSHLSFFRVQQNQRKLYVERTLQLQKMTAAKKQTACLDLSLNNDESVKQISIT
LDGATDSIQYFLWCERMSPFKKSPKKGDNQGALKDFIHTEKLTDFRPHFSSPPRILNANKTPKLYWFSDSQAEVEINGTV
SAVLIAEGDLKLTGKGRISGAVITNGNLTLDGVTLAYGKKTVVTLVRQYSQWQLAEKSWSDFNVQDE

Nucleotide


Download         Length: 684 bp        

>NTDB_id=60017 K6J62_RS00265 WP_110431768.1 56037..56720(-) (comP) [Haemophilus influenzae strain CHBN-III-8 isolate 10H15]
ATGACAATACAAAAAGGCATTATTACGCTGACTATTCTGATTTTTATTTCGGGTTTATTAACCGCAATTTTGTTGTTAGA
TGATAGCCATTTAAGTTTTTTTCGTGTGCAACAAAATCAACGAAAACTGTATGTGGAAAGAACATTACAACTGCAAAAAA
TGACAGCGGCGAAAAAACAAACTGCCTGCCTTGATTTATCATTAAATAATGATGAAAGTGTAAAGCAAATCAGCATTACG
CTTGATGGTGCCACAGATTCAATTCAATATTTTCTTTGGTGTGAAAGAATGAGCCCATTTAAAAAATCGCCTAAAAAGGG
AGATAATCAAGGTGCATTGAAAGATTTCATTCACACAGAAAAACTTACAGATTTTCGACCGCACTTTTCTTCCCCACCCA
GAATTTTAAACGCGAATAAAACACCTAAACTTTATTGGTTTTCAGATTCACAAGCGGAAGTTGAAATTAATGGCACAGTG
TCTGCCGTATTAATTGCAGAGGGCGATTTAAAATTGACTGGCAAAGGGAGGATTAGTGGCGCAGTGATTACCAACGGGAA
TTTAACTTTAGATGGCGTAACTTTAGCTTATGGGAAAAAGACGGTAGTAACCTTAGTTCGACAATATAGCCAGTGGCAGT
TAGCAGAAAAAAGTTGGAGTGATTTTAATGTTCAGGATGAATAA

Domains

Predicted by InterProScan.

Protein of unknown function (DUF2572) (DUF2572)

(5-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Haemophilus influenzae Rd KW20

91.189

100

0.912

Multiple sequence alignment