Detailed information NTG0600124

Bioinformatically predicted

Overview

• Name: amiF
• Type: Regulator
• Locus tag: K6973_RS09795
• Genome accession: NZ_CP082206
• Coordinates: 1968585..1969517 (-)
• Length: 310 a.a.
• NCBI ID: WP_222819335.1
• Uniprot ID: -
• Organism: Streptococcus dysgalactiae strain DY107
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 1963585..1974517

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
K6973_RS09770 (K6973_09770)	tsaD	1964068..1965090 (-)	1023	WP_222819332.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	-
K6973_RS09775 (K6973_09775)	rimI	1965080..1965505 (-)	426	WP_222819333.1	ribosomal protein S18-alanine N-acetyltransferase	-
K6973_RS09780 (K6973_09780)	tsaB	1965507..1966205 (-)	699	WP_222819334.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	-
K6973_RS09785 (K6973_09785)	-	1966491..1966721 (+)	231	WP_003056704.1	DNA-dependent RNA polymerase subunit epsilon	-
K6973_RS09790 (K6973_09790)	rnjA	1966723..1968405 (+)	1683	WP_003056700.1	ribonuclease J1	-
K6973_RS09795 (K6973_09795)	amiF	1968585..1969517 (-)	933	WP_222819335.1	ATP-binding cassette domain-containing protein	Regulator
K6973_RS09800 (K6973_09800)	oppD	1969510..1970562 (-)	1053	WP_222819336.1	ABC transporter ATP-binding protein	Regulator
K6973_RS09805 (K6973_09805)	-	1970574..1971605 (-)	1032	WP_218654837.1	ABC transporter permease	-
K6973_RS09810 (K6973_09810)	-	1971615..1972529 (-)	915	WP_003052794.1	ABC transporter permease	-
K6973_RS09815 (K6973_09815)	-	1972797..1974452 (-)	1656	WP_003058031.1	peptide ABC transporter substrate-binding protein	-

Sequence

Protein

• Length: 310 a.a.
• Molecular weight: 35251.11 Da
• Isoelectric Point: 6.8433

>NTDB_id=600124 K6973_RS09795 WP_222819335.1 1968585..1969517(-) (amiF) [Streptococcus dysgalactiae strain DY107]
MNDNRKKLVELKNVSLTFNKGKKNEVKAIDNVSFDIYEGEVFGLVGESGSGKTTVGRAILKLYDINEGEIIFNGETISHL
KGKDLRTFRKNAQMIFQDPQASLNGRMKIRDIVAEGLDIHGLTASKAEREERVQELLDLVGLNKDHLTRYPHEFSGGQRQ
RIGIARALAVKPKFIIADEPISALDVSIQAQVVNLMQKLQHKRGLTYLFIAHDLSMVKYISDRIGVMHWGKMLEIGTSDD
VYNYPIHPYTKSLLSAIPEPDPDKERQRVADVYDSSQELDGQERQMHEITPGHFVLATQEEADQYRREYR

Nucleotide

• Length: 933 bp

>NTDB_id=600124 K6973_RS09795 WP_222819335.1 1968585..1969517(-) (amiF) [Streptococcus dysgalactiae strain DY107]
ATGAATGATAATCGAAAGAAATTAGTAGAGTTAAAAAATGTCTCCTTAACTTTCAATAAGGGAAAGAAAAACGAAGTCAA
AGCCATTGATAATGTGAGCTTTGATATTTATGAAGGGGAAGTGTTTGGACTGGTTGGGGAATCTGGATCAGGGAAAACAA
CTGTTGGTCGCGCCATTTTAAAGCTTTATGATATTAATGAAGGGGAAATTATTTTTAATGGTGAAACCATTTCTCATTTG
AAAGGGAAAGACTTGCGGACCTTTCGTAAGAATGCTCAGATGATTTTCCAAGATCCTCAGGCTAGTCTTAACGGCCGTAT
GAAAATCAGAGATATTGTGGCAGAAGGACTAGATATTCATGGACTAACAGCTTCAAAGGCAGAACGAGAAGAACGCGTGC
AAGAACTCCTTGATTTGGTTGGGTTGAACAAGGACCATTTGACACGTTACCCCCATGAATTTTCTGGTGGTCAACGTCAA
CGGATTGGGATTGCCCGTGCTTTGGCAGTGAAACCTAAATTTATCATTGCTGATGAACCTATCTCAGCTCTCGATGTGTC
GATTCAGGCCCAGGTGGTTAACTTGATGCAAAAGCTTCAGCACAAACGTGGATTGACCTATCTTTTTATTGCCCATGACT
TGTCAATGGTCAAATACATTTCTGATCGTATCGGAGTCATGCACTGGGGTAAAATGTTGGAGATTGGGACCTCAGATGAT
GTCTATAATTATCCTATTCATCCTTATACCAAGAGCCTACTCTCGGCTATTCCTGAGCCAGATCCAGACAAAGAACGTCA
GCGGGTAGCTGATGTGTATGATTCAAGTCAAGAATTGGACGGCCAAGAACGTCAGATGCATGAGATTACTCCAGGGCATT
TTGTCTTAGCTACCCAAGAAGAAGCAGACCAATATCGACGGGAGTATCGTTAA

Domains

Predicted by InterproScan.

• Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY) (233-266)

• ABC transporter (ABC_tran) (30-181)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiF	Streptococcus thermophilus LMD-9	54.098	98.387	0.532
amiF	Streptococcus thermophilus LMG 18311	53.77	98.387	0.529
amiF	Streptococcus salivarius strain HSISS4	53.443	98.387	0.526