Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   K6973_RS04325 Genome accession   NZ_CP082206
Coordinates   832562..833428 (+) Length   288 a.a.
NCBI ID   WP_138125274.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae strain DY107     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 827562..838428
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6973_RS04300 (K6973_04300) atpD 828598..830004 (+) 1407 WP_003057452.1 F0F1 ATP synthase subunit beta -
  K6973_RS04305 (K6973_04305) - 830017..830433 (+) 417 WP_003050138.1 F0F1 ATP synthase subunit epsilon -
  K6973_RS04310 (K6973_04310) - 830762..830998 (+) 237 WP_277997757.1 DUF1146 family protein -
  K6973_RS04315 (K6973_04315) murA 831063..832334 (+) 1272 WP_129555870.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  K6973_RS04320 (K6973_04320) - 832338..832526 (+) 189 WP_003050141.1 DNA-directed RNA polymerase subunit beta -
  K6973_RS04325 (K6973_04325) endA 832562..833428 (+) 867 WP_138125274.1 DNA/RNA non-specific endonuclease Machinery gene
  K6973_RS04330 (K6973_04330) pheS 833711..834754 (+) 1044 WP_129555869.1 phenylalanine--tRNA ligase subunit alpha -
  K6973_RS04335 (K6973_04335) pheT 834964..837369 (+) 2406 WP_222819608.1 phenylalanine--tRNA ligase subunit beta -
  K6973_RS04340 (K6973_04340) - 837482..837859 (+) 378 WP_218655258.1 OsmC family protein -
  K6973_RS04345 (K6973_04345) - 837852..838238 (+) 387 WP_138125280.1 DUF1722 domain-containing protein -

Sequence

Protein


Download         Length: 288 a.a.        Molecular weight: 31933.93 Da        Isoelectric Point: 10.0750

>NTDB_id=600104 K6973_RS04325 WP_138125274.1 832562..833428(+) (endA) [Streptococcus dysgalactiae strain DY107]
MLTRKKRKRVLNSFLLILLVLGSSYLAKSDFIASNHPIKQTYRTILGDKGESSSESKEVYSEVPTEALSASVLTKTIKEQ
LGSDIEWNGAGAYIINRNKTDLNASVASLPYANNETKWVQGQKVPTRANALLTKSTRQYRNRYQTDNAYRTFKPAGWHQL
HHLKGNYDHAVDRGHLLGYALVGGLKGFDASTSNPDNIATQLSWANQADKPYSTGQNYYEGLVRRALDKGKRVRYRVTLL
YDGDNLLASGSQLEAKSADGSLAFNVFVPNVQAGLTVDYRTGQIAINP

Nucleotide


Download         Length: 867 bp        

>NTDB_id=600104 K6973_RS04325 WP_138125274.1 832562..833428(+) (endA) [Streptococcus dysgalactiae strain DY107]
ATGTTAACAAGGAAAAAACGAAAAAGGGTGCTTAATTCCTTCTTATTGATTTTGTTAGTGTTGGGGTCTAGTTACCTTGC
TAAGAGTGATTTCATAGCTAGCAATCACCCTATTAAGCAAACTTATCGTACCATTTTGGGAGATAAGGGTGAATCATCAT
CAGAATCAAAAGAAGTCTATAGTGAGGTTCCCACAGAAGCCCTATCGGCTTCTGTCTTGACCAAAACCATTAAGGAACAA
TTAGGTTCCGATATTGAATGGAATGGAGCAGGCGCTTATATTATCAACAGGAACAAAACAGATTTAAACGCAAGCGTAGC
CAGTCTGCCCTATGCCAATAATGAAACCAAATGGGTCCAAGGACAAAAGGTTCCTACTAGAGCTAATGCCTTACTTACTA
AGTCGACACGACAGTATCGAAATCGCTATCAAACGGACAATGCTTATCGTACCTTCAAGCCTGCTGGTTGGCACCAATTA
CATCACTTAAAAGGAAATTATGACCACGCAGTTGATAGAGGACATTTGCTAGGTTATGCTTTAGTTGGTGGACTGAAAGG
TTTTGATGCTTCTACCAGTAATCCTGATAATATTGCCACTCAACTAAGTTGGGCTAATCAAGCAGATAAACCCTATTCGA
CAGGTCAAAATTACTATGAAGGATTAGTACGTCGTGCATTGGATAAGGGGAAAAGGGTACGTTATCGTGTTACCTTGCTT
TATGATGGTGATAACCTGTTAGCCAGTGGTAGCCAGTTAGAGGCCAAATCTGCCGATGGGAGTTTAGCATTTAACGTGTT
TGTTCCAAATGTTCAAGCAGGGCTGACGGTTGATTATCGAACAGGACAGATTGCTATCAATCCCTAG

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(121-246)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

62.338

80.208

0.5
  endA Streptococcus pneumoniae D39

62.338

80.208

0.5
  endA Streptococcus pneumoniae R6

62.338

80.208

0.5
  endA Streptococcus pneumoniae TIGR4

62.338

80.208

0.5