Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   K6969_RS04435 Genome accession   NZ_CP082205
Coordinates   891830..892669 (+) Length   279 a.a.
NCBI ID   WP_171942585.1    Uniprot ID   -
Organism   Streptococcus suis strain AKJ18     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 886830..897669
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6969_RS04405 (K6969_04340) - 887294..888172 (+) 879 WP_002936012.1 F0F1 ATP synthase subunit gamma -
  K6969_RS04410 (K6969_04345) atpD 888192..889598 (+) 1407 WP_171942584.1 F0F1 ATP synthase subunit beta -
  K6969_RS04415 (K6969_04350) - 889608..890024 (+) 417 WP_002936007.1 F0F1 ATP synthase subunit epsilon -
  K6969_RS04420 (K6969_04355) - 890084..890308 (+) 225 WP_012775178.1 DUF1146 family protein -
  K6969_RS04425 (K6969_04360) murA 890333..891616 (+) 1284 WP_029180030.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  K6969_RS04430 (K6969_04365) - 891609..891800 (+) 192 WP_012775177.1 DNA-directed RNA polymerase subunit beta -
  K6969_RS04435 (K6969_04370) endA 891830..892669 (+) 840 WP_171942585.1 DNA/RNA non-specific endonuclease Machinery gene
  K6969_RS04440 (K6969_04375) pheS 892921..893964 (+) 1044 WP_024378481.1 phenylalanine--tRNA ligase subunit alpha -
  K6969_RS04445 (K6969_04380) - 894728..895249 (+) 522 WP_171942587.1 GNAT family N-acetyltransferase -
  K6969_RS04450 (K6969_04385) pheT 895251..897650 (+) 2400 WP_171942586.1 phenylalanine--tRNA ligase subunit beta -

Sequence

Protein


Download         Length: 279 a.a.        Molecular weight: 30099.34 Da        Isoelectric Point: 6.3496

>NTDB_id=600050 K6969_RS04435 WP_171942585.1 891830..892669(+) (endA) [Streptococcus suis strain AKJ18]
MAKKNVKKQAMSLLSLLATIVVVAGGYLLSDNKSSNLADYSYYVNQSKASEGTPSQELASSVLTEDVKKQLGNSIEWNGA
GAFIINGNKTDLDASVSSKPYADNKTKTVQGETVPTVANALLAKSTRQYKSREETGNGSTSWTPAGWHQVQDLDGSYDHA
IDRGHLLGYALIGGLKGFDASTSNPKNIAVQTAWSNQARAEDSTGQNYFESQVRKALDKNKRVRYRVTLVYADEDDLVPV
GSHLEAKAADGSLEFNVFVPNVQSGLSINYHSGEIAVNE

Nucleotide


Download         Length: 840 bp        

>NTDB_id=600050 K6969_RS04435 WP_171942585.1 891830..892669(+) (endA) [Streptococcus suis strain AKJ18]
ATGGCGAAGAAAAATGTAAAAAAACAAGCGATGAGTCTGCTCAGCTTATTGGCTACGATTGTTGTAGTAGCGGGTGGCTA
TCTTTTAAGTGATAACAAGAGCAGTAACCTTGCTGACTATTCCTATTATGTCAATCAGTCTAAGGCAAGTGAAGGCACAC
CTAGTCAGGAACTGGCTAGTTCGGTATTGACAGAAGATGTAAAAAAGCAACTGGGGAATTCGATTGAATGGAATGGTGCT
GGAGCATTTATTATTAACGGAAATAAGACTGATTTAGATGCTTCAGTCTCTAGTAAGCCCTATGCGGATAATAAGACAAA
GACTGTGCAGGGAGAAACGGTTCCAACAGTGGCAAATGCCCTTTTAGCCAAATCAACGCGACAGTATAAGAGTCGTGAAG
AAACAGGAAATGGTTCGACTTCATGGACCCCAGCTGGTTGGCATCAGGTACAGGATTTGGATGGTTCCTATGATCATGCG
ATTGATAGGGGGCATCTGCTGGGCTATGCCTTGATTGGCGGTTTAAAAGGCTTTGATGCTTCAACCAGCAATCCTAAGAA
TATTGCAGTTCAAACAGCTTGGTCCAATCAGGCAAGGGCTGAGGATTCGACGGGGCAAAACTATTTTGAGAGTCAAGTTC
GTAAAGCTTTGGATAAGAACAAACGTGTTCGTTACCGCGTGACCTTGGTGTATGCTGATGAGGATGATTTGGTTCCAGTC
GGAAGCCATCTAGAGGCAAAAGCAGCAGATGGTAGCCTAGAGTTCAATGTGTTCGTTCCAAATGTGCAGAGCGGTCTCAG
TATCAACTATCATAGTGGGGAAATTGCAGTAAATGAGTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(81-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

73.729

84.588

0.624
  endA Streptococcus pneumoniae D39

73.729

84.588

0.624
  endA Streptococcus pneumoniae R6

73.729

84.588

0.624
  endA Streptococcus pneumoniae TIGR4

73.729

84.588

0.624