Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   NDK36_RS06275 Genome accession   NZ_CP098491
Coordinates   1207422..1208339 (+) Length   305 a.a.
NCBI ID   WP_003232954.1    Uniprot ID   A0A9W5LHY5
Organism   Bacillus subtilis strain NB205     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1202422..1213339
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDK36_RS06260 (NDK36_06260) trpS 1203002..1203994 (-) 993 WP_003245134.1 tryptophan--tRNA ligase -
  NDK36_RS06265 (NDK36_06265) oppA 1204738..1206375 (+) 1638 WP_014479443.1 oligopeptide ABC transporter substrate-binding protein OppA -
  NDK36_RS06270 (NDK36_06270) oppB 1206483..1207418 (+) 936 WP_014479444.1 oligopeptide ABC transporter permease OppB -
  NDK36_RS06275 (NDK36_06275) amiD 1207422..1208339 (+) 918 WP_003232954.1 oligopeptide ABC transporter permease OppC Regulator
  NDK36_RS06280 (NDK36_06280) oppD 1208344..1209420 (+) 1077 WP_072173823.1 oligopeptide ABC transporter ATP-binding protein OppD -
  NDK36_RS06285 (NDK36_06285) oppF 1209422..1210339 (+) 918 WP_003245567.1 oligopeptide ABC transporter ATP-binding protein OppF -
  NDK36_RS06290 (NDK36_06290) yjbB 1210447..1211664 (+) 1218 WP_072592593.1 MFS transporter -
  NDK36_RS06295 (NDK36_06295) yjbC 1211828..1212406 (+) 579 WP_003224597.1 GNAT family N-acetyltransferase -
  NDK36_RS06300 (NDK36_06300) spx 1212587..1212982 (+) 396 WP_014476435.1 transcriptional regulator Spx -

Sequence

Protein


Download         Length: 305 a.a.        Molecular weight: 33621.12 Da        Isoelectric Point: 10.2873

>NTDB_id=600050 NDK36_RS06275 WP_003232954.1 1207422..1208339(+) (amiD) [Bacillus subtilis strain NB205]
MQNIPKNMFEPAAANAGDAEKISKKSLSLWKDAMLRFRSNKLAMVGLIIIVLIILMAIFAPMFSRYDYSTTNLLNADKPP
SKDHWFGTDDLGRDIFVRTWVGARISIFIGVAAAVLDLLIGVIWGSISGFRGGRTDEIMMRIADILWAVPSLLMVILLMV
VLPKGLFTIIIAMTITGWINMARIVRGQVLQLKNQEYVLASQTLGAKTSRLLFKHIVPNAMGSILVTMTLTVPTAIFTEA
FLSYLGLGVPAPLASWGTMASDGLPALTYYPWRLFFPAGFICITMFGFNVVGDGLRDALDPKLRK

Nucleotide


Download         Length: 918 bp        

>NTDB_id=600050 NDK36_RS06275 WP_003232954.1 1207422..1208339(+) (amiD) [Bacillus subtilis strain NB205]
ATGCAGAACATTCCGAAAAACATGTTTGAACCAGCCGCAGCGAATGCCGGCGATGCAGAAAAAATAAGTAAAAAGAGCCT
TTCCCTCTGGAAAGATGCGATGCTTCGCTTCCGCAGCAATAAGCTTGCAATGGTCGGGCTTATTATTATCGTGCTCATTA
TCCTTATGGCAATTTTTGCGCCGATGTTCTCAAGGTATGATTATTCAACTACTAATCTCTTAAATGCGGATAAGCCCCCT
TCAAAAGATCACTGGTTCGGAACAGATGATCTTGGGCGGGACATTTTCGTCCGTACATGGGTAGGGGCGCGAATCTCAAT
CTTTATCGGTGTTGCAGCTGCTGTTCTTGATTTGCTGATCGGCGTCATTTGGGGGAGCATTTCAGGCTTCCGCGGAGGCA
GAACGGACGAAATCATGATGCGTATCGCTGATATCCTTTGGGCAGTTCCTTCATTATTAATGGTTATCTTACTGATGGTT
GTTCTTCCGAAAGGTCTATTTACGATTATTATTGCCATGACGATTACGGGCTGGATTAATATGGCCAGAATCGTGCGCGG
ACAAGTGCTGCAGCTGAAGAATCAGGAGTATGTGCTTGCTTCACAGACACTGGGTGCAAAAACATCCCGTCTTCTGTTTA
AACATATCGTGCCAAACGCAATGGGTTCTATTTTGGTCACGATGACACTGACAGTTCCTACTGCGATTTTTACAGAAGCC
TTTTTAAGCTATTTGGGACTCGGTGTTCCGGCTCCGCTGGCAAGCTGGGGAACGATGGCTTCTGACGGATTGCCTGCATT
GACCTATTATCCGTGGCGTTTATTCTTCCCTGCCGGATTTATCTGCATTACAATGTTTGGCTTTAACGTTGTCGGCGACG
GATTAAGAGACGCATTGGATCCTAAGTTACGTAAATAA

Domains

Predicted by InterProScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(121-305)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9W5LHY5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus thermophilus LMG 18311

35.922

100

0.364
  amiD Streptococcus thermophilus LMD-9

35.922

100

0.364