Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   K6J60_RS08335 Genome accession   NZ_AP018778
Coordinates   1632624..1633964 (-) Length   446 a.a.
NCBI ID   WP_050848656.1    Uniprot ID   -
Organism   Haemophilus influenzae strain CHBN-III-7 isolate 15H01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1627624..1638964
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J60_RS08305 (CHBNIII7_15800) - 1627669..1629690 (-) 2022 WP_118807816.1 N-6 DNA methylase -
  K6J60_RS08310 (CHBNIII7_15810) - 1629690..1630154 (-) 465 WP_221267272.1 hypothetical protein -
  K6J60_RS08315 (CHBNIII7_15820) - 1630190..1630525 (-) 336 WP_118807238.1 helix-turn-helix transcriptional regulator -
  K6J60_RS08320 (CHBNIII7_15830) - 1630631..1631653 (+) 1023 WP_118807239.1 IS1595 family transposase -
  K6J60_RS08325 (CHBNIII7_15840) - 1631653..1632090 (+) 438 WP_118807240.1 DNA repair protein -
  K6J60_RS08330 (CHBNIII7_15850) - 1632105..1632479 (-) 375 WP_118807241.1 hypothetical protein -
  K6J60_RS08335 (CHBNIII7_15860) rarA 1632624..1633964 (-) 1341 WP_050848656.1 replication-associated recombination protein A Machinery gene
  K6J60_RS08340 (CHBNIII7_15870) lolA 1634025..1634642 (-) 618 WP_005664565.1 outer membrane lipoprotein chaperone LolA -
  K6J60_RS08345 (CHBNIII7_15880) - 1634660..1637425 (-) 2766 WP_074039511.1 DNA translocase FtsK -
  K6J60_RS08350 (CHBNIII7_15890) lrp 1637427..1637906 (-) 480 WP_005664572.1 leucine-responsive transcriptional regulator Lrp -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 50235.07 Da        Isoelectric Point: 6.3316

>NTDB_id=60002 K6J60_RS08335 WP_050848656.1 1632624..1633964(-) (rarA) [Haemophilus influenzae strain CHBN-III-7 isolate 15H01]
MSNLNFDFAENDFRPLAAKMRPTSLEQYFGQSHLIGEGKPLRKAIQAGHIHSMILWGPPGTGKTTLAEIIAQRINAEVER
ISAVTSGIKEIREAIDRAKQNRLADRKTILFVDEVHRFNKSQQDAFLPHIEDGTVIFIGATTENPSFELNNALLSRARVY
VLKSLTTAEIEQVLQQAIEDPERGLGKERLILEENLLQVLGEYVNGDARLALNCLELMVDMAEETENGKKIDRTLLKEVL
GERQARFDKQGDRFYDLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCF
TRVGAYEGERAIAQAIIYLAVAPKSNAVYTAFNTAKQQAKDLPDYDVPPHLRNAPTNLMKELGYGTEYRYAHDEPNAYAA
GENYFPPELKDTQYYFPTNRGMEIQIKEKLERLREQDKSAVKKRYK

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=60002 K6J60_RS08335 WP_050848656.1 1632624..1633964(-) (rarA) [Haemophilus influenzae strain CHBN-III-7 isolate 15H01]
ATGTCTAACCTCAATTTTGATTTTGCCGAAAATGATTTTCGCCCACTGGCGGCCAAGATGCGTCCAACGAGTCTAGAACA
ATATTTTGGGCAAAGCCATTTAATTGGCGAGGGCAAGCCACTGCGAAAAGCTATCCAAGCTGGGCATATTCATTCTATGA
TTTTGTGGGGACCACCAGGTACGGGGAAAACAACCCTTGCAGAAATCATAGCACAACGTATTAATGCAGAAGTAGAGCGA
ATTTCTGCGGTGACGAGTGGTATCAAAGAAATTCGTGAAGCGATTGATCGAGCAAAACAAAATCGTCTTGCGGATCGTAA
AACTATCTTATTTGTGGATGAAGTCCATCGTTTTAATAAAAGCCAGCAAGATGCATTTTTACCGCACATTGAAGACGGAA
CCGTTATTTTTATTGGGGCGACAACAGAAAATCCCTCTTTTGAGCTAAATAATGCGTTGCTTTCTCGTGCCCGAGTGTAT
GTGCTGAAATCACTCACAACGGCTGAAATTGAACAAGTTTTGCAGCAAGCTATAGAAGATCCTGAACGTGGATTGGGTAA
AGAGCGGTTAATTTTAGAAGAGAATTTACTGCAAGTACTTGGCGAATATGTTAATGGGGATGCACGATTAGCCTTGAATT
GCCTCGAATTAATGGTGGATATGGCAGAAGAAACGGAAAATGGAAAGAAAATTGACCGCACTTTATTAAAAGAAGTCTTA
GGCGAACGTCAAGCGAGATTTGATAAACAAGGTGATCGTTTCTATGATTTAATTTCTGCGCTACATAAATCTGTTCGCGG
TTCTGCTCCAGATGCTGCGCTGTATTGGTATGCAAGAATTTTAACAGCGGGTGGCGATCCTTTATATGTCGCGCGCCGAT
TACTTGCCATTGCTTCAGAAGATGTGGGAAATGCGGATCCTCGTGCTATGCAAGTTGCATTGGCTGCTTGGGATTGCTTT
ACTCGAGTGGGGGCTTATGAAGGGGAGCGAGCCATCGCCCAAGCCATTATTTATCTTGCAGTAGCCCCAAAAAGTAATGC
GGTTTATACCGCATTTAACACTGCGAAACAGCAAGCGAAAGATTTACCTGATTACGATGTTCCACCACATTTACGCAATG
CGCCGACTAATTTAATGAAAGAGCTCGGATATGGCACTGAATATCGTTATGCTCACGATGAACCTAACGCTTATGCGGCA
GGCGAAAATTATTTCCCACCTGAATTAAAAGACACTCAATATTATTTTCCAACGAATAGAGGTATGGAAATTCAGATTAA
GGAAAAACTAGAACGGTTACGTGAGCAAGATAAAAGTGCGGTGAAAAAACGGTATAAATAA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(188-266)

MgsA AAA+ ATPase C terminal (MgsA_C)

(267-433)

ATPase family associated with various cellular activities (AAA) (AAA)

(53-159)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

39.007

94.843

0.37

Multiple sequence alignment