Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   K6974_RS08780 Genome accession   NZ_CP082204
Coordinates   1743692..1744531 (-) Length   279 a.a.
NCBI ID   WP_105130698.1    Uniprot ID   -
Organism   Streptococcus suis strain FJSM5     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1738692..1749531
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6974_RS08765 (K6974_08675) uidA 1739052..1740851 (-) 1800 WP_024377281.1 beta-glucuronidase -
  K6974_RS08770 (K6974_08680) - 1740867..1741895 (-) 1029 WP_024377280.1 sugar kinase -
  K6974_RS08775 (K6974_08685) - 1741952..1743505 (-) 1554 WP_222336685.1 MFS transporter -
  K6974_RS08780 (K6974_08690) endA 1743692..1744531 (-) 840 WP_105130698.1 DNA/RNA non-specific endonuclease Machinery gene
  K6974_RS08785 (K6974_08695) - 1744561..1744752 (-) 192 WP_012775177.1 DNA-directed RNA polymerase subunit beta -
  K6974_RS08790 (K6974_08700) murA 1744745..1746028 (-) 1284 WP_222336686.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  K6974_RS08795 (K6974_08705) - 1746052..1746276 (-) 225 WP_099877511.1 DUF1146 family protein -
  K6974_RS08800 (K6974_08710) - 1746336..1746752 (-) 417 WP_002936007.1 F0F1 ATP synthase subunit epsilon -
  K6974_RS08805 (K6974_08715) atpD 1746762..1748168 (-) 1407 WP_002936008.1 F0F1 ATP synthase subunit beta -
  K6974_RS08810 (K6974_08720) - 1748188..1749066 (-) 879 WP_029184973.1 F0F1 ATP synthase subunit gamma -

Sequence

Protein


Download         Length: 279 a.a.        Molecular weight: 30163.43 Da        Isoelectric Point: 6.7651

>NTDB_id=599993 K6974_RS08780 WP_105130698.1 1743692..1744531(-) (endA) [Streptococcus suis strain FJSM5]
MAKKNVKKQAMSLLSLLATIVVVAGGYLLSDNKSSNVADYSYYVNQSKASESTPSQELASSVLTEDVKKQLGHSIDWNGA
GAFIINGNKTDLDASVSSKPYADNKTKTVQGETVPTVANALLAKSTRQYKSREETGNGSTSWTPPGWHQVQDLDGSYDHA
IDRGHLLGYALIGGLKGFDASTSNPKNIAVQTAWSNQARAEDSTGQNYFESQVRKALDKNKRVRYRVTLIYADEDDLVPV
GSHLEAKAADGSLEFNVFVPNVQSGLSINYHSGEIAVNQ

Nucleotide


Download         Length: 840 bp        

>NTDB_id=599993 K6974_RS08780 WP_105130698.1 1743692..1744531(-) (endA) [Streptococcus suis strain FJSM5]
ATGGCGAAGAAAAATGTAAAAAAACAAGCGATGAGTCTGCTCAGCTTATTGGCTACGATTGTTGTAGTGGCGGGGGGCTA
TCTTTTAAGTGATAACAAGAGCAGTAACGTTGCTGATTATTCCTATTATGTCAATCAGTCTAAGGCAAGCGAGAGCACAC
CTAGTCAGGAACTGGCTAGTTCGGTATTGACAGAGGATGTTAAGAAACAGCTTGGACATTCAATTGACTGGAATGGAGCG
GGTGCTTTTATCATCAACGGAAATAAGACTGATTTAGATGCTTCAGTCTCTAGTAAGCCCTATGCGGATAATAAGACAAA
GACTGTGCAGGGAGAAACGGTTCCAACAGTGGCAAATGCCCTTTTAGCCAAATCAACGCGACAGTATAAGAGTCGTGAAG
AAACAGGAAATGGTTCGACTTCATGGACTCCGCCTGGCTGGCATCAGGTACAGGATTTGGATGGATCCTATGATCATGCG
ATTGATAGGGGGCATCTGCTGGGCTATGCCTTGATTGGCGGTTTAAAAGGCTTTGATGCTTCAACCAGCAATCCTAAGAA
TATTGCAGTTCAAACAGCTTGGTCCAATCAGGCAAGGGCTGAGGATTCGACGGGGCAAAACTATTTTGAGAGTCAAGTTC
GTAAAGCTTTGGATAAGAACAAACGTGTTCGTTACCGCGTGACCTTGATTTATGCTGATGAGGATGATTTGGTTCCAGTC
GGAAGCCATCTAGAGGCAAAAGCAGCAGATGGTAGCCTAGAGTTCAATGTGTTCGTTCCAAATGTGCAGAGCGGTCTCAG
TATCAACTATCATAGTGGGGAAATTGCAGTAAATCAATAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(81-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

74.153

84.588

0.627
  endA Streptococcus pneumoniae D39

74.153

84.588

0.627
  endA Streptococcus pneumoniae R6

74.153

84.588

0.627
  endA Streptococcus pneumoniae TIGR4

74.153

84.588

0.627