Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   K6974_RS00860 Genome accession   NZ_CP082204
Coordinates   142938..143891 (+) Length   317 a.a.
NCBI ID   WP_222336983.1    Uniprot ID   A0A9X4MTF2
Organism   Streptococcus suis strain FJSM5     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 137938..148891
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6974_RS00845 (K6974_00830) - 138473..139635 (+) 1163 Protein_132 IS630 family transposase -
  K6974_RS00850 (K6974_00835) - 139945..141108 (-) 1164 WP_392338665.1 IS30 family transposase -
  K6974_RS00855 (K6974_00840) - 141328..142533 (+) 1206 WP_052819543.1 hypothetical protein -
  K6974_RS00860 (K6974_00845) comYH 142938..143891 (+) 954 WP_222336983.1 class I SAM-dependent methyltransferase Machinery gene
  K6974_RS00865 (K6974_00850) - 143942..145129 (+) 1188 WP_105096834.1 acetate kinase -
  K6974_RS00870 (K6974_00855) - 145202..146458 (-) 1257 WP_222336984.1 ISL3 family transposase -
  K6974_RS00875 (K6974_00860) - 146812..147363 (+) 552 WP_222336985.1 folate family ECF transporter S component -
  K6974_RS00880 (K6974_00865) - 147419..148675 (+) 1257 WP_222336986.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35764.78 Da        Isoelectric Point: 4.3650

>NTDB_id=599973 K6974_RS00860 WP_222336983.1 142938..143891(+) (comYH) [Streptococcus suis strain FJSM5]
MNFEKIEQAYDLLLENVQTIQNQLGTNIYDAMIEQNAAYVADQHETDLVVNNNQTLKQLDLTKEEWRRAYQFLLIKANQT
EPMQYNHQFTPDSIGFILSFLVDQLVPTQKVTVLEIGSGTGNLAQTILNASQKELDYLGIEVDDLLIDLSASIADVMQAE
ISFAQGDAVRPQILKESQIILADLPIGYYPDDQIASRYQVASSNEHTYAHHLLMEQSLKYLEKDGFAILLAPNDLLTSPQ
SDLLKGWLQEQANIVAMIALPPNLFGKAAMAKSIFVLQKKAARSLTPFVYPLQSLQEPEAIQKFMVNFKNWKQENAI

Nucleotide


Download         Length: 954 bp        

>NTDB_id=599973 K6974_RS00860 WP_222336983.1 142938..143891(+) (comYH) [Streptococcus suis strain FJSM5]
ATGAATTTTGAAAAGATCGAACAGGCTTATGACCTGCTATTAGAAAACGTACAGACTATCCAAAACCAGCTAGGTACCAA
TATCTATGATGCCATGATTGAGCAAAATGCTGCTTACGTAGCTGATCAACATGAGACGGACCTTGTTGTCAATAACAATC
AGACCTTGAAACAACTAGATTTAACCAAGGAAGAATGGCGTCGTGCCTACCAATTCTTGCTCATCAAGGCCAATCAGACT
GAACCCATGCAGTACAATCACCAGTTCACACCAGATTCCATCGGATTTATCCTATCTTTTCTAGTAGACCAATTGGTGCC
GACTCAAAAGGTGACGGTTCTAGAAATTGGTTCGGGGACAGGCAATCTAGCTCAGACCATTCTCAACGCCAGCCAGAAAG
AATTGGATTACTTGGGGATCGAAGTGGACGACCTCTTGATTGATTTGTCGGCAAGTATTGCGGATGTCATGCAGGCAGAG
ATTTCTTTCGCCCAGGGCGATGCGGTACGTCCGCAGATTTTGAAGGAAAGCCAAATCATTCTTGCGGATTTGCCGATTGG
TTACTATCCAGATGATCAGATTGCCAGCCGTTATCAGGTTGCCAGTTCAAATGAACATACCTACGCCCATCATTTACTCA
TGGAACAATCCCTCAAATATCTGGAAAAAGATGGCTTTGCGATTTTGTTGGCTCCAAATGATTTATTGACTAGTCCGCAA
AGCGATTTGCTGAAAGGTTGGTTACAGGAGCAAGCCAATATTGTTGCAATGATTGCCCTGCCACCAAATCTCTTTGGGAA
GGCTGCTATGGCCAAGTCTATTTTTGTCTTGCAAAAGAAAGCTGCAAGATCGTTGACGCCGTTTGTTTATCCCTTACAAA
GTCTTCAAGAACCAGAAGCGATTCAGAAGTTTATGGTCAATTTTAAAAATTGGAAGCAAGAAAATGCAATTTAA

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(68-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA159

60.443

99.685

0.603
  comYH Streptococcus mutans UA140

60.127

99.685

0.599