Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   K6972_RS06705 Genome accession   NZ_CP082203
Coordinates   1355394..1356233 (-) Length   279 a.a.
NCBI ID   WP_222812393.1    Uniprot ID   -
Organism   Streptococcus suis strain NJ3     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1350394..1361233
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6972_RS06690 (K6972_06690) uidA 1350755..1352554 (-) 1800 WP_205027220.1 beta-glucuronidase -
  K6972_RS06695 (K6972_06695) - 1352570..1353598 (-) 1029 WP_222812392.1 sugar kinase -
  K6972_RS06700 (K6972_06700) - 1353654..1355207 (-) 1554 WP_172030052.1 MFS transporter -
  K6972_RS06705 (K6972_06705) endA 1355394..1356233 (-) 840 WP_222812393.1 DNA/RNA non-specific endonuclease Machinery gene
  K6972_RS06710 (K6972_06710) - 1356263..1356454 (-) 192 WP_012775177.1 DNA-directed RNA polymerase subunit beta -
  K6972_RS06715 (K6972_06715) murA 1356447..1357730 (-) 1284 WP_136628365.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  K6972_RS06720 (K6972_06720) - 1357754..1357978 (-) 225 WP_012775178.1 DUF1146 family protein -
  K6972_RS06725 (K6972_06725) - 1358038..1358454 (-) 417 WP_002936007.1 F0F1 ATP synthase subunit epsilon -
  K6972_RS06730 (K6972_06730) atpD 1358464..1359870 (-) 1407 WP_024407431.1 F0F1 ATP synthase subunit beta -
  K6972_RS06735 (K6972_06735) - 1359890..1360768 (-) 879 WP_002936012.1 F0F1 ATP synthase subunit gamma -

Sequence

Protein


Download         Length: 279 a.a.        Molecular weight: 30226.35 Da        Isoelectric Point: 5.9494

>NTDB_id=599934 K6972_RS06705 WP_222812393.1 1355394..1356233(-) (endA) [Streptococcus suis strain NJ3]
MAKKNVKKQTMSLLSLLATIVVVTGGYLLSDNKSSNVADYSYYVNQSKASESTPSQELASSVLTEDVKKQLGNSIEWNGA
GAFIINGNQTDLDASVASVPYGDNKTKTVQGETVPTVANALLAKSTRQYKDREETGNGRTSWTPAGWHQVHDLTGEYDHA
VDRGHLLGYALIGGLSGFDASTSNPKNIAVQTAWSNQANDQTSTGQNYFESQIRRALDKNKRVRYRVTVVYAESEDLVPV
GSHLEAKAADGSLEFNVFVPNVQSGLSINYHSGEITVNE

Nucleotide


Download         Length: 840 bp        

>NTDB_id=599934 K6972_RS06705 WP_222812393.1 1355394..1356233(-) (endA) [Streptococcus suis strain NJ3]
ATGGCGAAGAAAAATGTAAAAAAACAAACAATGAGTCTGCTCAGCTTATTGGCTACGATTGTTGTAGTGACGGGTGGCTA
TCTTTTAAGTGATAACAAGAGCAGTAACGTTGCTGATTATTCCTATTATGTCAATCAGTCTAAGGCAAGTGAGAGCACAC
CTAGTCAGGAACTGGCTAGTTCGGTATTGACAGAAGATGTAAAAAAACAACTGGGGAATTCGATTGAATGGAATGGTGCT
GGAGCATTTATTATTAACGGGAATCAAACGGATTTAGATGCATCGGTTGCTAGTGTTCCTTATGGTGATAATAAGACTAA
AACAGTCCAGGGAGAAACGGTTCCAACAGTAGCCAATGCGCTTTTAGCCAAATCTACACGTCAGTATAAGGACCGTGAAG
AAACAGGAAATGGTCGGACTTCTTGGACACCTGCGGGTTGGCACCAGGTCCATGATTTAACTGGAGAATATGACCATGCA
GTGGACCGTGGTCACCTCCTAGGTTATGCTTTGATTGGTGGATTGTCTGGCTTCGATGCTTCAACCAGCAATCCTAAGAA
TATTGCAGTTCAAACAGCTTGGTCCAACCAAGCTAACGACCAAACTTCAACTGGGCAGAATTATTTTGAAAGTCAGATTC
GGCGGGCCTTGGATAAAAATAAGCGTGTCCGCTATCGTGTGACCGTGGTGTATGCTGAGAGTGAAGACCTTGTTCCTGTC
GGAAGCCATCTAGAGGCAAAAGCAGCAGATGGTAGCCTAGAGTTCAATGTGTTCGTTCCAAATGTGCAGAGTGGCTTGAG
TATTAATTATCATAGTGGTGAAATCACGGTGAATGAATAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(81-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

70.339

84.588

0.595
  endA Streptococcus pneumoniae D39

70.339

84.588

0.595
  endA Streptococcus pneumoniae R6

70.339

84.588

0.595
  endA Streptococcus pneumoniae TIGR4

70.339

84.588

0.595