Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   K6J67_RS07535 Genome accession   NZ_AP018776
Coordinates   1534908..1536248 (-) Length   446 a.a.
NCBI ID   WP_011272475.1    Uniprot ID   Q4QL22
Organism   Haemophilus influenzae strain CHBN-III-5 isolate 13H30     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1529908..1541248
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J67_RS07515 (CHBNIII5_14340) purU 1530056..1530892 (+) 837 WP_005661478.1 formyltetrahydrofolate deformylase -
  K6J67_RS07520 (CHBNIII5_14350) aroA 1530892..1532190 (+) 1299 WP_011272478.1 3-phosphoshikimate 1-carboxyvinyltransferase -
  K6J67_RS07525 (CHBNIII5_14360) dcm 1532445..1533668 (+) 1224 WP_011272477.1 DNA (cytosine-5-)-methyltransferase -
  K6J67_RS07530 (CHBNIII5_14370) - 1533678..1534820 (+) 1143 WP_011272476.1 hypothetical protein -
  K6J67_RS07535 (CHBNIII5_14380) rarA 1534908..1536248 (-) 1341 WP_011272475.1 replication-associated recombination protein A Machinery gene
  K6J67_RS07540 (CHBNIII5_14390) lolA 1536309..1536926 (-) 618 WP_005661471.1 outer membrane lipoprotein chaperone LolA -
  K6J67_RS07545 (CHBNIII5_14400) - 1536944..1539703 (-) 2760 WP_050823043.1 DNA translocase FtsK -
  K6J67_RS07550 (CHBNIII5_14410) lrp 1539705..1540184 (-) 480 WP_005664572.1 leucine-responsive transcriptional regulator Lrp -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 50278.16 Da        Isoelectric Point: 6.3312

>NTDB_id=59876 K6J67_RS07535 WP_011272475.1 1534908..1536248(-) (rarA) [Haemophilus influenzae strain CHBN-III-5 isolate 13H30]
MSNLNFDFAENDFRPLAAKMRPTNLEQYFGQSHLIGEGKPLRKAIQAGHIHSMILWGPPGTGKTTLAEIIAQRINAEVER
ISAVTSGIKEIREAIDRAKQNRLADRKTILFVDEVHRFNKSQQDAFLPHIEDGTVIFIGATTENPSFELNNALLSRARVY
VLKSLTTAEIEQVLQQAVEDPERGLGKERLILEENLLQVLAEYVNGDARLALNCLELMVDMADEMENGKKIDRTLLKEVL
GERQARFDKQGDRFYDLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCF
TRVGAYEGERAIAQAIIYLAVAPKSNAVYTAFNTAKQQAKDLPDYDVPPHLRNAPTNLMKELGYGAEYRYAHDEPNAYAA
GENYFPPELKDTQYYFPTNRGMEIQIKEKLERLREQDKSTVKKRYK

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=59876 K6J67_RS07535 WP_011272475.1 1534908..1536248(-) (rarA) [Haemophilus influenzae strain CHBN-III-5 isolate 13H30]
ATGTCTAACCTCAATTTTGATTTTGCCGAAAATGATTTTCGCCCACTGGCGGCCAAGATGCGTCCAACAAATCTAGAACA
ATATTTTGGGCAAAGCCATTTAATTGGCGAGGGCAAGCCACTGCGAAAAGCTATCCAAGCTGGGCATATTCATTCTATGA
TTTTGTGGGGCCCACCAGGTACGGGGAAAACAACCCTTGCAGAAATCATAGCACAACGTATTAATGCAGAAGTAGAGCGA
ATTTCTGCGGTGACGAGTGGTATCAAAGAAATTCGTGAAGCGATTGATCGTGCAAAACAAAATCGTCTTGCGGATCGTAA
AACTATCTTATTTGTGGATGAAGTCCATCGTTTTAATAAAAGCCAGCAAGATGCATTTTTACCGCACATTGAAGACGGAA
CCGTTATTTTTATTGGGGCGACAACAGAAAATCCCTCTTTTGAGCTAAATAATGCGTTGCTTTCTCGTGCCCGAGTGTAT
GTGCTGAAATCACTCACAACGGCTGAAATTGAACAAGTTTTGCAGCAAGCTGTAGAAGATCCTGAACGAGGATTGGGTAA
AGAGCGGTTAATTTTAGAAGAGAATTTACTGCAAGTGCTTGCCGAATATGTTAATGGGGATGCACGATTAGCCTTGAATT
GCCTCGAATTAATGGTGGATATGGCAGATGAAATGGAAAATGGAAAGAAAATTGACCGCACTTTATTAAAAGAAGTCTTA
GGCGAACGTCAAGCGAGATTTGATAAACAAGGTGATCGTTTCTATGATTTAATTTCTGCGCTACATAAATCTGTTCGAGG
TTCTGCTCCAGACGCTGCACTGTATTGGTATGCAAGAATTTTAACGGCAGGTGGCGATCCTTTATATGTCGCGCGCCGAT
TACTTGCCATTGCTTCAGAAGATGTGGGAAATGCAGATCCTCGTGCTATGCAAGTTGCATTGGCTGCTTGGGATTGCTTT
ACTCGAGTGGGGGCTTATGAAGGAGAGAGAGCCATCGCCCAAGCCATTATATATCTCGCAGTAGCGCCAAAAAGTAATGC
GGTTTATACTGCATTTAACACAGCAAAACAGCAAGCGAAAGATTTGCCCGATTACGATGTTCCACCACATTTACGCAATG
CGCCAACTAATTTAATGAAAGAGCTTGGCTATGGGGCTGAATATCGTTATGCTCACGATGAACCTAACGCTTATGCGGCA
GGCGAAAATTATTTCCCACCTGAATTAAAAGATACTCAATATTATTTTCCAACGAATAGAGGTATGGAAATTCAGATTAA
GGAAAAACTAGAACGATTACGTGAGCAAGATAAAAGTACGGTGAAAAAACGGTATAAATAA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(188-266)

MgsA AAA+ ATPase C terminal (MgsA_C)

(267-433)

ATPase family associated with various cellular activities (AAA) (AAA)

(53-159)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 3BGE

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

39.243

94.843

0.372