Detailed information    

insolico Bioinformatically predicted

Overview

Name   comN   Type   Machinery gene
Locus tag   K5O18_RS10375 Genome accession   NZ_CP081939
Coordinates   2079928..2080449 (+) Length   173 a.a.
NCBI ID   WP_110480071.1    Uniprot ID   A0AAE5TFZ9
Organism   Avibacterium paragallinarum strain p4chr1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2074928..2085449
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5O18_RS10340 (K5O18_10340) tolQ 2075198..2075881 (+) 684 WP_035688447.1 protein TolQ -
  K5O18_RS10345 (K5O18_10345) tolR 2075933..2076355 (+) 423 WP_110480065.1 colicin uptake protein TolR -
  K5O18_RS10350 (K5O18_10350) tolA 2076372..2077586 (+) 1215 WP_110480067.1 cell envelope integrity protein TolA -
  K5O18_RS10355 (K5O18_10355) tolB 2077638..2078927 (+) 1290 WP_226537711.1 Tol-Pal system beta propeller repeat protein TolB -
  K5O18_RS10360 (K5O18_10360) pal 2078938..2079390 (+) 453 WP_017806949.1 peptidoglycan-associated lipoprotein Pal -
  K5O18_RS10375 (K5O18_10375) comN 2079928..2080449 (+) 522 WP_110480071.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  K5O18_RS10380 (K5O18_10380) - 2080450..2081169 (+) 720 WP_110480073.1 type II secretion system protein J -
  K5O18_RS10385 (K5O18_10385) - 2081171..2081836 (+) 666 WP_110480075.1 DUF2572 family protein -
  K5O18_RS10390 (K5O18_10390) - 2081817..2082122 (+) 306 WP_017806953.1 DUF5374 domain-containing protein -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 20063.57 Da        Isoelectric Point: 8.7144

>NTDB_id=598536 K5O18_RS10375 WP_110480071.1 2079928..2080449(+) (comN) [Avibacterium paragallinarum strain p4chr1]
MNVKGFTLLESLISLLILSILLLMALPIWQQNHNEAVLEKEQHRLYLFLRYIQSRVENSNDIWFLVANRDLLSKKWCISA
QIKQDKICNCLKPQYCSNELMVNIYTPMFPQETMIISKNYYPKEMARLSGIRNTVQSDCFLLQAGDKRTLFSFFNVGSLK
LKEISSLSACGDK

Nucleotide


Download         Length: 522 bp        

>NTDB_id=598536 K5O18_RS10375 WP_110480071.1 2079928..2080449(+) (comN) [Avibacterium paragallinarum strain p4chr1]
ATGAATGTAAAAGGTTTTACATTGCTTGAATCATTGATTTCATTATTAATTTTAAGCATATTACTATTAATGGCACTGCC
AATTTGGCAACAAAATCATAATGAAGCGGTGCTTGAAAAAGAGCAGCATAGACTTTATCTTTTTTTACGTTATATTCAAA
GTAGAGTCGAAAACTCTAATGACATATGGTTTTTAGTCGCAAATCGTGATCTCCTTAGTAAGAAATGGTGTATTTCTGCT
CAAATAAAACAAGATAAAATCTGTAATTGTTTAAAGCCCCAATATTGTTCCAATGAATTAATGGTTAATATTTATACGCC
GATGTTCCCGCAAGAAACAATGATTATAAGTAAAAACTATTATCCTAAAGAAATGGCAAGACTGAGCGGTATTCGGAATA
CCGTGCAATCAGATTGTTTCCTTTTGCAAGCTGGGGATAAACGAACACTTTTTTCATTTTTTAATGTAGGAAGTTTAAAA
TTAAAAGAGATCTCTTCTTTGAGTGCTTGTGGAGATAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comN Haemophilus influenzae Rd KW20

51.786

97.11

0.503