Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   K6T40_RS05145 Genome accession   NZ_CP081923
Coordinates   1051376..1053145 (-) Length   589 a.a.
NCBI ID   WP_261390744.1    Uniprot ID   -
Organism   Riemerella anatipestifer strain 20160930RA1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1046376..1058145
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6T40_RS05125 (K6T40_05125) dinB 1046544..1047626 (-) 1083 WP_014938050.1 DNA polymerase IV -
  K6T40_RS05130 (K6T40_05130) - 1047712..1048482 (-) 771 WP_014938049.1 succinate dehydrogenase/fumarate reductase iron-sulfur subunit -
  K6T40_RS05135 (K6T40_05135) - 1048506..1050518 (-) 2013 WP_014938048.1 fumarate reductase/succinate dehydrogenase flavoprotein subunit -
  K6T40_RS05140 (K6T40_05140) - 1050583..1051251 (-) 669 WP_004918227.1 succinate dehydrogenase cytochrome b subunit -
  K6T40_RS05145 (K6T40_05145) comEC 1051376..1053145 (-) 1770 WP_261390744.1 ComEC/Rec2 family competence protein Machinery gene
  K6T40_RS05150 (K6T40_05150) - 1053234..1053539 (-) 306 WP_014938045.1 hypothetical protein -
  K6T40_RS05155 (K6T40_05155) - 1053661..1055289 (-) 1629 WP_014938044.1 acyl-CoA carboxylase subunit beta -
  K6T40_RS05160 (K6T40_05160) - 1055396..1056589 (-) 1194 WP_014938043.1 endonuclease/exonuclease/phosphatase family protein -
  K6T40_RS05165 (K6T40_05165) - 1056692..1057570 (-) 879 WP_004918508.1 IS982-like element ISRa1 family transposase -

Sequence

Protein


Download         Length: 589 a.a.        Molecular weight: 68844.23 Da        Isoelectric Point: 9.9359

>NTDB_id=598298 K6T40_RS05145 WP_261390744.1 1051376..1053145(-) (comEC) [Riemerella anatipestifer strain 20160930RA1]
MKKQILFSLFISFSLGVFLQDLSELSWQQSNITTTLGAISLGLIWVKADWLVRIRIWLLNIFFLCFGVFTHYLNSEKSVL
PSVSKKEELVFKIEQKLNSTAKNKRYEITAFHQNQPFKAVLSAPKDLEELDYKHYYQSQLSLYPLESSKNNYQFDYAKYQ
ARKAVYYKAYAKDLHKAPKSELTFSEKMKQWRLELLSNIDKNEKLSQQTRAFLKGIVLADRTEVDAETNTNFRRSGLTHV
LAISGSHIAIIFGVIYMLLSLIVPAKFRTGVILFSLVLIWIFTWFIGWGSSVVRSCIMLTVYFGFVLLQRKPQVLDALAL
AGLGILMVDTQELFSVGFQLSFSAVLGIYWFNKPIIRLFPNPRNKTQKLLLYTFTVSTAAQLGTMPIVIYYFHQYSAWSI
LANLLVLPLMEIVIIISFLMTIIFGLGIYWSWLSFTYDWLIKALLWLIGFFGKIEMGYFQDIPLSIWEMGVWAVGLYFLR
EILIRFTWRGFMKLMFSVLLFFGIKMGLDVRAYHDKEARWHYHYHTKVFSVLDKGKVYFWVSDKDNLEMLESYLIKPYVI
SKRAESYKVKMMSKEVDEVIFNGKRYLFQ

Nucleotide


Download         Length: 1770 bp        

>NTDB_id=598298 K6T40_RS05145 WP_261390744.1 1051376..1053145(-) (comEC) [Riemerella anatipestifer strain 20160930RA1]
GTGAAAAAGCAAATTCTTTTTAGCCTTTTTATAAGTTTTTCATTAGGTGTCTTTTTGCAAGACCTTAGTGAACTTTCGTG
GCAACAGTCTAATATTACAACCACATTAGGAGCTATTAGTCTTGGATTGATTTGGGTGAAAGCAGATTGGTTAGTTCGAA
TTAGAATTTGGTTACTTAATATCTTTTTTCTCTGCTTTGGAGTATTTACTCATTACCTTAATTCGGAAAAATCAGTTTTG
CCGAGTGTTTCTAAAAAGGAAGAACTTGTTTTTAAAATTGAACAAAAGCTAAATTCAACGGCTAAAAATAAACGCTATGA
AATAACAGCATTTCATCAAAATCAACCTTTTAAAGCAGTTTTATCTGCGCCAAAAGATTTGGAAGAATTGGATTATAAGC
ACTACTATCAATCTCAACTTAGTTTATATCCGTTGGAGTCTTCCAAGAATAATTACCAGTTTGATTATGCCAAATATCAA
GCGAGGAAAGCTGTTTATTATAAGGCTTATGCCAAAGATTTACACAAAGCGCCAAAATCAGAGCTTACTTTCTCCGAAAA
AATGAAACAATGGCGACTGGAACTCCTTAGCAATATAGATAAAAACGAAAAACTTTCACAACAAACTAGAGCTTTCCTAA
AAGGTATTGTTTTGGCTGATAGAACGGAGGTAGATGCGGAAACAAATACCAATTTTAGGAGAAGTGGTTTAACACATGTT
TTAGCCATTTCTGGGTCGCATATTGCAATTATCTTTGGGGTGATCTATATGCTACTGAGTTTGATTGTGCCAGCAAAATT
TAGGACAGGCGTAATATTGTTTAGCTTGGTGTTAATTTGGATTTTTACTTGGTTTATTGGTTGGGGAAGTTCTGTTGTTA
GGTCTTGTATCATGCTCACCGTTTATTTTGGTTTTGTTCTTTTGCAAAGAAAACCTCAAGTTTTAGACGCTTTAGCCTTA
GCAGGGCTGGGTATTCTGATGGTAGATACACAAGAACTATTTTCAGTAGGGTTTCAGTTGAGTTTTTCTGCGGTGTTGGG
GATTTATTGGTTTAATAAACCTATCATTCGTCTTTTTCCAAATCCTAGAAACAAAACTCAAAAACTATTACTTTATACTT
TTACTGTGTCCACGGCGGCACAGCTTGGGACTATGCCTATTGTGATTTATTATTTCCACCAGTATTCAGCGTGGTCTATT
TTGGCTAATCTTTTAGTTCTTCCTTTAATGGAAATTGTGATTATAATATCGTTTTTAATGACGATTATTTTTGGTTTAGG
GATTTATTGGAGTTGGCTATCTTTTACTTATGATTGGTTAATTAAAGCGTTGCTATGGCTGATAGGTTTCTTTGGTAAAA
TAGAGATGGGGTATTTTCAAGACATACCGTTGAGTATTTGGGAGATGGGTGTTTGGGCGGTAGGGCTTTATTTTCTAAGA
GAAATATTGATTCGTTTTACATGGAGAGGTTTTATGAAGTTGATGTTTTCTGTACTTTTATTTTTCGGGATTAAAATGGG
GTTAGATGTTAGAGCTTATCACGATAAAGAAGCGAGATGGCATTATCATTATCACACTAAAGTGTTCTCTGTTTTGGATA
AAGGGAAAGTGTATTTTTGGGTGTCAGATAAAGATAATTTAGAGATGTTAGAAAGTTATCTCATAAAACCTTATGTAATT
TCTAAAAGAGCTGAAAGCTATAAAGTAAAAATGATGTCTAAAGAAGTAGATGAGGTTATTTTTAATGGAAAAAGGTATTT
GTTTCAATAA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(35-173)

Competence protein (Competence)

(216-479)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Riemerella anatipestifer ATCC 11845 = DSM 15868

90.492

100

0.905