Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   K6T24_RS21545 Genome accession   NZ_CP081872
Coordinates   4235097..4237418 (-) Length   773 a.a.
NCBI ID   WP_000941245.1    Uniprot ID   -
Organism   Bacillus toyonensis strain UTDF19-29B     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4230097..4242418
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6T24_RS21515 (K6T24_21410) - 4230532..4230708 (-) 177 WP_001242605.1 hypothetical protein -
  K6T24_RS21520 (K6T24_21415) - 4230794..4230985 (-) 192 WP_238185636.1 damage-inducible protein DinB -
  K6T24_RS21525 (K6T24_21420) - 4231065..4231397 (-) 333 Protein_4204 YrdB family protein -
  K6T24_RS21530 (K6T24_21425) - 4231667..4232107 (-) 441 WP_001266954.1 D-tyrosyl-tRNA(Tyr) deacylase -
  K6T24_RS21535 (K6T24_21430) relA 4232125..4234308 (-) 2184 WP_001262805.1 GTP diphosphokinase -
  K6T24_RS21540 (K6T24_21435) - 4234519..4235031 (-) 513 WP_000346217.1 adenine phosphoribosyltransferase -
  K6T24_RS21545 (K6T24_21440) recJ 4235097..4237418 (-) 2322 WP_000941245.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  K6T24_RS21550 (K6T24_21445) - 4237520..4238413 (-) 894 WP_000409731.1 cation diffusion facilitator family transporter -
  K6T24_RS21555 (K6T24_21450) secDF 4238578..4240842 (-) 2265 WP_085450576.1 protein translocase subunit SecDF -
  K6T24_RS21560 (K6T24_21455) - 4241125..4241409 (-) 285 WP_000890217.1 post-transcriptional regulator -

Sequence

Protein


Download         Length: 773 a.a.        Molecular weight: 87495.04 Da        Isoelectric Point: 5.1179

>NTDB_id=597980 K6T24_RS21545 WP_000941245.1 4235097..4237418(-) (recJ) [Bacillus toyonensis strain UTDF19-29B]
MLQPKTRWKEKEYNEERVSELAKKLQLSPLVISLFLGRGLDTEDKILDFLNTENQEFHDPFLLEGMDRTVERVNKAIQNG
EQILIFGDYDADGVSSTTVLYLALQELGAEVEFYIPNRFTEGYGPNEEAFRWAHSAGFSLIITVDTGIAAVHEAKVAKEL
GIDLIITDHHEPPPELPEALAIIHPKLDGGVYPFHYLAGVGVAFKVAHALLGRVPEHLLEIAVIGTVADLVSLHGENRLL
VKRGLKHMRMTKNIGLKALFKVANVSQSEITEESIGFSIAPRINAVGRLEDATPAVHLLLSDDPEEAKELAEEIDELNKL
RKDIVKQITEEAIAEVENKFPPEENKVLVLAKEGWNPGVIGIVASKLVERFYRPTIVLSIDPVKETAKGSARSIAGFDLF
ANLSDCRELLPHFGGHPMAAGMTLHMNDVDELRRRLNAQADAILTEADFIPITAVDTFCKVEDVTLAAIEDMQKLAPFGV
GNPKPRLAVKNAELESIRAIGSDGSHLKMALRDGQATLDTIGFGFGAYAKDISPVAKVSVIGEASINEWNNFKKPQLMVQ
DIAVEAWQLFDWRSMRNVEANLAELPKEKITMLYFSEEVLNKFSLEDYKEHLVHASEVTHLDDQYIVLLDLPKGTDELRD
LFKVGFPSRIYTLFYQENNHLFSTVPTREHFKWYYSFLNQKSPFSLRQYGEQLCRHKGWSKDTVNFMTQVFFELEFVTIK
DGVIFMAEQKQKRDLIESNTYREKMNHLQLEKELVYSTYQQLYTWFETIRNHK

Nucleotide


Download         Length: 2322 bp        

>NTDB_id=597980 K6T24_RS21545 WP_000941245.1 4235097..4237418(-) (recJ) [Bacillus toyonensis strain UTDF19-29B]
GTGTTACAACCGAAGACGCGTTGGAAAGAAAAAGAATATAATGAAGAGCGAGTGAGTGAATTAGCAAAAAAGTTACAACT
ATCACCACTTGTCATTTCGTTATTCCTCGGTAGAGGATTAGATACAGAAGATAAGATTTTAGATTTTTTAAATACAGAAA
ATCAAGAATTTCACGATCCGTTTTTATTAGAAGGAATGGATAGAACGGTAGAACGTGTAAATAAGGCGATTCAAAATGGA
GAGCAAATATTAATATTTGGTGATTATGATGCGGACGGAGTAAGTAGTACAACGGTTTTATATCTTGCTCTGCAAGAATT
AGGTGCAGAGGTAGAATTTTATATTCCAAACCGTTTTACAGAAGGTTATGGACCGAACGAAGAAGCGTTTCGTTGGGCGC
ATAGTGCAGGGTTCTCACTTATTATTACTGTCGATACTGGTATCGCAGCGGTACATGAAGCGAAGGTAGCGAAGGAACTT
GGAATAGATCTTATTATTACGGATCACCATGAGCCACCGCCAGAATTACCAGAAGCACTCGCGATTATTCATCCAAAACT
AGATGGCGGTGTGTATCCGTTTCATTATTTAGCCGGTGTAGGTGTTGCGTTTAAAGTTGCACATGCATTATTAGGTCGTG
TACCAGAACATTTATTAGAAATTGCAGTAATCGGTACGGTAGCCGATTTAGTATCACTTCATGGCGAAAATAGATTGCTA
GTGAAGCGCGGTTTAAAACATATGCGGATGACGAAAAATATTGGTTTAAAGGCATTGTTTAAAGTTGCTAACGTTTCGCA
AAGTGAAATTACAGAAGAAAGCATTGGATTCTCAATCGCACCGCGTATTAATGCAGTTGGGCGTTTAGAAGATGCTACGC
CGGCTGTACACCTATTATTATCAGATGACCCAGAGGAAGCGAAAGAACTGGCTGAAGAAATTGATGAGCTGAACAAACTT
CGAAAAGATATTGTAAAGCAAATTACAGAAGAGGCTATCGCTGAAGTGGAAAATAAATTCCCACCAGAAGAAAATAAAGT
GTTAGTGCTTGCAAAAGAAGGCTGGAATCCAGGTGTAATTGGAATTGTCGCTTCTAAATTAGTTGAACGTTTTTATCGTC
CAACAATTGTATTAAGCATTGATCCTGTCAAAGAAACAGCAAAGGGTTCAGCACGTAGTATCGCGGGATTTGATTTGTTT
GCAAACTTGTCGGATTGTAGAGAGTTATTACCGCACTTCGGAGGGCATCCGATGGCCGCGGGAATGACGCTACATATGAA
TGATGTAGATGAGTTACGTCGCCGCTTAAATGCGCAAGCGGATGCAATTTTAACAGAAGCAGATTTTATTCCAATCACAG
CAGTTGATACATTTTGTAAAGTGGAAGATGTAACACTTGCAGCAATTGAGGATATGCAAAAGTTAGCGCCATTTGGTGTT
GGAAATCCGAAACCACGTCTTGCAGTGAAAAATGCTGAATTAGAAAGTATTCGTGCAATCGGATCAGATGGTTCACATTT
AAAAATGGCACTTCGTGACGGACAGGCAACACTGGATACAATTGGATTCGGATTTGGTGCGTATGCAAAAGATATTTCGC
CAGTTGCTAAGGTATCTGTAATAGGAGAGGCATCCATTAATGAATGGAATAATTTTAAGAAGCCACAATTAATGGTACAA
GATATTGCTGTAGAGGCATGGCAATTATTTGATTGGCGTAGTATGCGTAATGTGGAAGCAAATTTAGCAGAACTTCCGAA
AGAAAAAATAACAATGTTGTATTTTTCTGAAGAGGTATTGAATAAGTTTTCTTTAGAAGACTATAAAGAACATCTTGTGC
ATGCATCAGAGGTAACTCATTTAGATGATCAATACATCGTGTTACTCGATTTGCCAAAAGGAACAGATGAATTACGTGAT
TTATTTAAAGTAGGATTCCCATCTAGAATCTATACGTTATTTTATCAAGAGAACAATCATCTATTTAGTACAGTCCCAAC
GAGGGAACATTTTAAATGGTACTATTCTTTCTTAAACCAAAAATCACCATTTTCTTTAAGACAATATGGGGAACAACTAT
GTCGCCATAAAGGTTGGTCAAAAGATACAGTAAATTTCATGACACAGGTGTTTTTTGAGTTAGAATTTGTTACAATAAAA
GACGGTGTCATTTTTATGGCCGAACAAAAACAAAAGCGTGATTTAATTGAATCGAACACATATCGTGAGAAAATGAACCA
CTTACAATTAGAAAAAGAATTGGTTTATAGCACATATCAGCAACTATATACATGGTTTGAAACGATTCGTAATCATAAAT
AA

Domains

Predicted by InterproScan.

DHHA1 domain (DHHA1)

(315-438)

DHH family (DHH)

(82-226)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-766)

RecJ OB domain (RecJ_OB)

(456-561)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

52.455

100

0.525