Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   K6T23_RS15170 Genome accession   NZ_CP081870
Coordinates   2887864..2890224 (-) Length   786 a.a.
NCBI ID   WP_238281595.1    Uniprot ID   -
Organism   Rossellomorea marisflavi strain UTDF19-31A     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2882864..2895224
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6T23_RS15155 (K6T23_15180) dtd 2884411..2884848 (-) 438 WP_056535151.1 D-aminoacyl-tRNA deacylase -
  K6T23_RS15160 (K6T23_15185) - 2884863..2887055 (-) 2193 WP_056535148.1 RelA/SpoT family protein -
  K6T23_RS15165 (K6T23_15190) - 2887361..2887873 (-) 513 WP_048006207.1 adenine phosphoribosyltransferase -
  K6T23_RS15170 (K6T23_15195) recJ 2887864..2890224 (-) 2361 WP_238281595.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  K6T23_RS15175 (K6T23_15200) - 2890334..2890678 (-) 345 WP_238281597.1 LapA family protein -
  K6T23_RS15180 (K6T23_15205) secDF 2890862..2893123 (-) 2262 WP_056535142.1 protein translocase subunit SecDF -
  K6T23_RS15185 (K6T23_15210) - 2893295..2893615 (-) 321 WP_053426463.1 post-transcriptional regulator -

Sequence

Protein


Download         Length: 786 a.a.        Molecular weight: 88373.98 Da        Isoelectric Point: 4.9352

>NTDB_id=597925 K6T23_RS15170 WP_238281595.1 2887864..2890224(-) (recJ) [Rossellomorea marisflavi strain UTDF19-31A]
MLNAKTRWKMKDSDQHKIAELAEELKVPPLVAKLLINRDLADADDARDFLFDTGGSFHDPFLFDDMQKAKERIMLAIEHE
ERILVYGDYDADGVSSTSVLMTVLTDLGAQAEFYIPNRFTEGYGPNEDAFRWAADEGFAVIITVDTGISAVGEAKLAKEL
GIDLILTDHHEPGPELPPVFAMIHPKVEGCSYPFKELAGVGVALKLAHALYGEFPDHLLDLAAIGTIADLVPLHGENRLI
AKKGIARLKVTDRLGIKALCRVANAQQNEMNEETVGFMIAPRINAVGRLGDADPAVDLMLSRDPEEAKALAEEIDGLNKE
RQSIVAKMTEEAVEMVEKEFPPSENGVLVIGKEGWNPGVVGIVASRLVDRFYRPTIVLSFDSDSNKAKGSARSIAGFDLF
KNLSMNRELLPHFGGHPMAAGMTLALSDVDELRSRLNEQAKEVLSEDDFIPVTELDAEVAVDEITVESIEKMHLLAPFGM
NNPKPKWVIRDVSIDHYKKIGSAQNHLKLVLAENGVQVDGVGFGLGELADHMTPYVKASVIGELSINEWNNRKKPQIFLQ
DIQISSWQLFDMRGIKQVTKWAPLIPDGDRVIVCFHPKSADTTLFKGEVRYIQSESDLEGFVVDGCNLVLLDLPGDRRLM
EQLLELGRPHRIYAHFHQHEDHFFSTMPTRDHFKWYYAFLHKRGSFDLKKHGNDLAKYKGWSMETIDFMSKVFFELKFVT
IEDGLISLHPVKVKKDLSESPAYMRKQHQYELENELLYSSYQELKTWFSERMKESAIVEEEVEAWT

Nucleotide


Download         Length: 2361 bp        

>NTDB_id=597925 K6T23_RS15170 WP_238281595.1 2887864..2890224(-) (recJ) [Rossellomorea marisflavi strain UTDF19-31A]
ATGTTAAATGCAAAAACACGCTGGAAAATGAAAGATTCTGACCAGCACAAGATAGCAGAATTGGCAGAAGAGTTGAAGGT
TCCCCCGCTTGTTGCGAAATTATTGATAAATCGGGATCTGGCAGATGCCGATGATGCCCGGGACTTTTTATTTGATACAG
GCGGATCGTTTCATGATCCATTTCTTTTTGATGATATGCAAAAAGCGAAAGAGCGCATCATGCTGGCAATCGAGCATGAG
GAGCGCATCCTTGTGTATGGTGACTATGATGCCGACGGAGTAAGTTCCACATCAGTCCTGATGACGGTACTGACAGACCT
TGGGGCACAAGCGGAATTTTATATCCCCAACCGGTTTACCGAAGGATATGGACCGAACGAAGACGCCTTCAGATGGGCTG
CTGATGAAGGGTTCGCCGTTATCATTACGGTGGATACCGGTATATCCGCAGTGGGAGAAGCCAAGCTTGCCAAAGAACTT
GGTATCGACTTGATCTTAACGGATCACCATGAACCGGGTCCCGAATTGCCGCCGGTCTTCGCGATGATCCACCCGAAAGT
GGAAGGATGCTCCTATCCATTCAAGGAACTGGCAGGGGTCGGGGTGGCTTTGAAGCTGGCTCACGCTCTCTACGGGGAGT
TTCCCGACCATCTGCTGGATTTGGCCGCAATCGGTACGATCGCCGATCTGGTTCCCCTCCATGGGGAGAACCGGCTGATT
GCCAAGAAGGGGATCGCCAGGCTGAAGGTAACGGACCGCCTTGGGATCAAGGCCCTGTGCCGTGTGGCGAATGCCCAGCA
AAATGAGATGAATGAAGAGACCGTTGGATTCATGATTGCACCGAGGATCAATGCCGTCGGCAGGCTGGGTGATGCCGATC
CCGCAGTGGATCTCATGCTTTCCCGTGATCCGGAAGAAGCAAAGGCACTCGCAGAAGAGATTGACGGCTTGAACAAAGAG
CGCCAATCCATCGTAGCGAAAATGACGGAAGAAGCTGTAGAGATGGTGGAGAAGGAATTCCCTCCATCTGAAAACGGTGT
TCTTGTCATCGGGAAGGAAGGCTGGAACCCTGGGGTAGTGGGAATCGTTGCTTCCCGTCTCGTCGACAGGTTTTACCGTC
CGACCATTGTCCTTAGTTTCGATTCTGATTCGAATAAAGCGAAAGGTTCGGCAAGAAGCATTGCCGGGTTCGATCTGTTC
AAGAATCTCTCCATGAATCGTGAACTCCTTCCCCATTTCGGGGGGCATCCGATGGCTGCGGGAATGACCCTTGCCCTATC
CGATGTCGATGAGCTCCGTTCAAGATTGAATGAACAGGCAAAAGAAGTCCTGAGCGAAGACGACTTCATCCCGGTTACAG
AGCTCGATGCCGAAGTCGCCGTGGACGAGATCACTGTTGAATCCATCGAGAAAATGCACCTCCTTGCGCCATTCGGGATG
AACAACCCGAAGCCGAAGTGGGTCATACGGGATGTATCGATCGATCATTATAAAAAGATCGGTTCTGCTCAGAATCACCT
TAAGCTTGTCCTAGCCGAAAACGGTGTACAAGTGGATGGGGTTGGGTTCGGCCTCGGTGAACTTGCCGATCACATGACGC
CTTATGTAAAAGCTTCCGTTATCGGAGAACTGTCGATCAATGAATGGAATAATCGCAAGAAGCCTCAGATCTTCCTGCAG
GATATCCAGATTTCGTCCTGGCAGCTTTTCGATATGAGGGGGATCAAGCAGGTGACGAAATGGGCCCCTCTCATCCCTGA
TGGTGACAGGGTGATCGTATGCTTCCATCCGAAATCGGCGGATACAACGCTATTCAAAGGGGAAGTCCGGTATATCCAGA
GTGAATCCGATCTTGAAGGGTTCGTGGTGGATGGATGCAATCTCGTACTCCTCGATCTCCCTGGGGACCGTCGACTGATG
GAGCAGCTTCTTGAACTCGGCAGGCCGCATCGCATCTACGCCCATTTCCACCAGCATGAAGACCATTTCTTCAGTACGAT
GCCCACCCGTGATCATTTCAAATGGTATTATGCCTTCCTTCATAAGAGGGGTTCATTCGATCTGAAGAAACACGGAAATG
ACCTTGCCAAGTACAAGGGGTGGTCCATGGAAACAATCGATTTCATGTCAAAGGTGTTTTTTGAATTGAAGTTTGTTACA
ATAGAAGATGGTTTGATTTCTCTTCATCCTGTCAAAGTGAAGAAAGACCTGTCCGAATCTCCTGCCTACATGAGGAAGCA
GCATCAGTACGAGCTTGAAAATGAGCTCCTGTATTCGTCATATCAGGAACTGAAGACATGGTTCAGCGAAAGGATGAAAG
AGTCCGCTATAGTTGAGGAGGAAGTAGAAGCATGGACTTGA

Domains

Predicted by InterproScan.

DHH family (DHH)

(82-226)

DHHA1 domain (DHHA1)

(305-439)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(568-768)

RecJ OB domain (RecJ_OB)

(456-561)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

56.082

99.364

0.557