Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   K6T23_RS15045 Genome accession   NZ_CP081870
Coordinates   2859831..2862200 (-) Length   789 a.a.
NCBI ID   WP_238281581.1    Uniprot ID   -
Organism   Rossellomorea marisflavi strain UTDF19-31A     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2854831..2867200
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6T23_RS15020 (K6T23_15045) - 2854891..2855157 (-) 267 WP_048006427.1 IreB family regulatory phosphoprotein -
  K6T23_RS15025 (K6T23_15050) alaS 2855241..2857865 (-) 2625 WP_238281577.1 alanine--tRNA ligase -
  K6T23_RS15030 (K6T23_15055) - 2858173..2859258 (-) 1086 WP_238281579.1 AI-2E family transporter -
  K6T23_RS15035 (K6T23_15060) - 2859351..2859482 (-) 132 WP_079516445.1 YrzQ family protein -
  K6T23_RS15040 (K6T23_15065) - 2859498..2859722 (-) 225 WP_079516779.1 hypothetical protein -
  K6T23_RS15045 (K6T23_15070) recD2 2859831..2862200 (-) 2370 WP_238281581.1 ATP-dependent RecD-like DNA helicase Machinery gene
  K6T23_RS15050 (K6T23_15075) - 2862218..2862889 (-) 672 WP_079516447.1 tetratricopeptide repeat protein -
  K6T23_RS15055 (K6T23_15080) mnmA 2863192..2864307 (-) 1116 WP_056535176.1 tRNA 2-thiouridine(34) synthase MnmA -
  K6T23_RS15060 (K6T23_15085) - 2864336..2865478 (-) 1143 WP_148984604.1 cysteine desulfurase family protein -
  K6T23_RS15065 (K6T23_15090) cymR 2865490..2865909 (-) 420 WP_048006195.1 cysteine metabolism transcriptional regulator CymR -

Sequence

Protein


Download         Length: 789 a.a.        Molecular weight: 89001.41 Da        Isoelectric Point: 4.7694

>NTDB_id=597924 K6T23_RS15045 WP_238281581.1 2859831..2862200(-) (recD2) [Rossellomorea marisflavi strain UTDF19-31A]
MSQQDSLQLFGDEELYVKGRHLVTIFHNEDNMYSVVRIRVEETNDEGYSDKEAVVTGHFPKLHEEETYSFFGRFQDHPKF
GTQFHADHFKKEIPQSKQGIVHYLSSDLFSGIGTKTAEKIVEHVGENAITKILENPSVLDEVPKLTKEKAKTIFDTLSEH
QGLERVMIMLNDFGFGPQISMKIYQAYKEQALEIIQNNPYKLVEDIEGIGFTRADELGSKIGITGSHPDRIKAGCLYTLE
QMCVKQGHVYLEAEELIVSVKDLLEKSQSVRIEFEEISAQVVALEEEGKVAGEGTKIYTPSLYFSEKGIVTNIERILAQT
DYEDQFPQSEFLLSLGALEDRLGVQYAPSQREAIETALMSPMLLLTGGPGTGKTTVINGIVELYADLHGCSLDPKEYKDE
PFPVLLAAPTGRAAKRMTESTGLPAMTIHRLLGWNGKEGFQTDEERAIEGKLLIVDEVSMVDTWLAHQLLKALPENIQVI
FVGDEDQLPSVGPGQVLKDLLESGRVPTVRLTDIYRQEEGSSIIDLAHQMKAGRLPDDLVKQQKDRSFFPCRTHQITEVV
QKVVENAKKKGFTPKDIQVLAPMYRGPAGIDRLNVLLQEIFNKNDGTRKEIAFGDVKYRIGDKVLQLVNQPENNVFNGDI
GEVVSIFYAKENTEKQDMVIVSYEGTEVTYTRQDLGQITHAYCCSIHKSQGSEFPIVILPVVKSYYRMLRRNLLYTAITR
SKQFLILCGEEDAFRMGVEREEDIIRKTTLKERLQTMEDSVPEDDAPIDLMKVDPMIGMEGITPYDFMT

Nucleotide


Download         Length: 2370 bp        

>NTDB_id=597924 K6T23_RS15045 WP_238281581.1 2859831..2862200(-) (recD2) [Rossellomorea marisflavi strain UTDF19-31A]
TTGAGCCAGCAAGACTCTTTACAATTATTTGGAGATGAAGAACTGTACGTCAAAGGGCGCCATCTCGTTACGATCTTCCA
CAATGAAGACAATATGTACAGTGTCGTGCGCATCAGGGTGGAAGAGACCAATGATGAGGGCTACAGTGATAAAGAAGCCG
TTGTAACGGGACATTTTCCGAAGCTTCATGAAGAAGAAACCTACTCCTTTTTCGGTCGTTTTCAGGATCATCCGAAGTTC
GGCACTCAGTTTCATGCCGATCATTTCAAGAAGGAAATCCCCCAGTCCAAACAAGGGATCGTCCACTATTTATCCAGTGA
TCTGTTCAGCGGGATCGGGACGAAGACGGCTGAAAAGATCGTGGAACACGTAGGTGAAAATGCCATCACCAAAATCCTTG
AGAATCCATCGGTCCTCGACGAGGTGCCGAAGCTTACGAAGGAAAAGGCAAAGACCATCTTTGATACATTATCCGAGCAT
CAGGGACTAGAGCGCGTCATGATCATGCTCAACGATTTTGGTTTCGGCCCGCAGATTTCCATGAAGATCTACCAGGCCTA
TAAAGAACAGGCACTGGAGATCATCCAGAACAATCCCTATAAGCTGGTGGAGGATATCGAAGGTATCGGGTTCACCCGTG
CCGACGAACTAGGCTCGAAGATCGGGATCACAGGCAGTCATCCCGACAGGATCAAGGCCGGCTGTTTGTATACGTTGGAA
CAGATGTGCGTGAAACAGGGTCATGTGTACCTTGAGGCGGAAGAACTCATTGTGAGCGTGAAGGACCTGCTGGAAAAGAG
TCAGTCCGTACGCATCGAATTCGAGGAGATCTCTGCCCAGGTCGTGGCGCTTGAAGAGGAAGGGAAAGTGGCCGGTGAGG
GGACGAAGATTTACACCCCTTCCCTTTATTTCTCCGAAAAAGGCATTGTCACGAATATCGAGAGGATCCTTGCCCAGACC
GATTATGAAGATCAGTTCCCTCAATCGGAATTCCTCCTTTCCTTAGGTGCATTGGAGGACCGATTGGGCGTGCAGTATGC
CCCTTCACAGCGTGAAGCCATCGAAACGGCACTCATGAGCCCGATGCTCCTCTTGACGGGAGGACCTGGTACGGGAAAAA
CCACCGTCATCAACGGGATTGTCGAGCTCTATGCCGATCTTCACGGTTGTTCGCTTGACCCGAAGGAATATAAGGATGAA
CCGTTCCCGGTGCTTCTTGCTGCCCCGACGGGAAGGGCCGCCAAGCGGATGACGGAATCGACGGGACTGCCTGCCATGAC
CATCCACCGACTGTTGGGCTGGAATGGAAAAGAGGGTTTTCAGACAGACGAAGAAAGGGCCATCGAAGGAAAGCTGCTGA
TTGTCGATGAAGTATCGATGGTGGATACATGGCTTGCCCATCAGCTCCTCAAGGCCCTGCCTGAAAATATTCAGGTGATC
TTTGTGGGCGATGAAGATCAGCTTCCATCCGTCGGACCGGGACAGGTGCTGAAGGATCTATTGGAATCGGGAAGGGTGCC
GACGGTGCGATTGACGGATATTTACCGCCAGGAAGAAGGCTCTTCCATCATTGACCTTGCCCATCAAATGAAGGCAGGAC
GTTTGCCGGATGACCTTGTGAAGCAGCAGAAGGACCGTTCTTTCTTCCCTTGCCGGACCCATCAGATCACCGAAGTGGTT
CAGAAAGTGGTGGAAAACGCGAAGAAGAAAGGCTTCACACCGAAGGATATTCAGGTTCTGGCCCCGATGTACAGAGGTCC
AGCAGGAATCGACCGGTTGAACGTCCTTCTGCAGGAAATCTTCAATAAGAATGATGGAACGCGGAAGGAAATCGCCTTCG
GGGATGTGAAGTACCGGATCGGGGACAAAGTGCTTCAGCTTGTCAACCAGCCCGAGAACAACGTCTTCAACGGGGACATT
GGTGAAGTGGTGTCCATCTTTTACGCAAAGGAAAACACGGAAAAGCAGGATATGGTCATCGTTTCCTACGAGGGAACGGA
GGTCACCTATACCCGTCAGGATCTCGGACAGATCACCCATGCGTACTGCTGCTCCATCCATAAATCCCAGGGAAGTGAGT
TTCCCATCGTCATCCTTCCGGTGGTGAAAAGTTATTACCGTATGCTGAGGAGAAATCTTCTATATACGGCGATCACCAGA
AGCAAGCAGTTCCTCATCCTGTGCGGGGAAGAAGATGCGTTCCGTATGGGGGTCGAACGGGAAGAGGATATCATAAGGAA
GACGACCCTGAAGGAAAGGCTTCAAACAATGGAAGACAGTGTGCCGGAAGACGATGCCCCGATCGACTTGATGAAGGTGG
ACCCCATGATCGGGATGGAGGGCATCACACCGTATGACTTCATGACGTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(346-549)

Helix-hairpin-helix containing domain (HHH_RecD2)

(159-250)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(680-728)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(593-661)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

62.437

100

0.63