Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   K5P74_RS01315 Genome accession   NZ_CP081846
Coordinates   260111..261955 (+) Length   614 a.a.
NCBI ID   WP_222226284.1    Uniprot ID   -
Organism   Enterococcus raffinosus strain CX012922     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 255111..266955
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5P74_RS01300 (K5P74_01300) - 255209..257032 (+) 1824 WP_222226282.1 APC family permease -
  K5P74_RS01305 (K5P74_01305) - 257268..257714 (+) 447 WP_010747153.1 MarR family winged helix-turn-helix transcriptional regulator -
  K5P74_RS01310 (K5P74_01310) - 257714..260095 (+) 2382 WP_222226283.1 ABC transporter ATP-binding protein -
  K5P74_RS01315 (K5P74_01315) rcrQ 260111..261955 (+) 1845 WP_222226284.1 ABC transporter ATP-binding protein Regulator
  K5P74_RS01320 (K5P74_01320) - 262006..262599 (-) 594 WP_261321704.1 hypothetical protein -
  K5P74_RS01325 (K5P74_01325) - 262589..263593 (-) 1005 WP_222226286.1 DUF4947 domain-containing protein -
  K5P74_RS01330 (K5P74_01330) - 263794..265365 (-) 1572 Protein_264 IS1182 family transposase -
  K5P74_RS01335 (K5P74_01335) - 265513..266175 (-) 663 WP_028020376.1 ABC transporter permease -

Sequence

Protein


Download         Length: 614 a.a.        Molecular weight: 67993.58 Da        Isoelectric Point: 6.3350

>NTDB_id=597696 K5P74_RS01315 WP_222226284.1 260111..261955(+) (rcrQ) [Enterococcus raffinosus strain CX012922]
MAEQKQNRPHGGGPGRGMAAPVEKAKDFKGTIKKLVSYLGAYKIAVFFVMIFAAASTIFNIWGPKILSKAITELFNGLIK
KYQGTGDINFEKIGGILLFMLALYGVASLFGIIQGWIMSTISQKITYRMRKEISKKINRMPMNYFESRTTGEVLSRITND
VDTLGQSLNQSLTQLITSTFTIVGVIVMMLSISVKMTGIAILIVPISLILILVVVKNSQKYFKTQQEYLGVINGKVEETI
GGYTIVRLFNEEENSLKEFKEQNDVLFKSAWKSQFLSGLMQPIMNFVGNLGYVGVAIAGGVMAYNGSITVGDIQAFIQYV
RNLTQPIAQLAQVSNMLQSMAAAAERVFEFLAEDEEDQLAENPVQIDKAEGMVDFEHVQFGYTPDKIVIQDFTSHVDPGQ
TVAIVGPTGAGKTTMVKLLMRFYDVNSGAIKIDGHNIKDFNRADLRKNIGMVLQDTWLFKGTIMDNLRYGRLDATDEEVY
AAAKAAHVDHFIKTLPGGYNMELNEESSNISQGQKQLLTIARAILADKPILILDEATSSVDTRTEGLIQEAMNNLMKGRT
SFVIAHRLSTIKDADKILYMQGGDIKEQGSHEELLAQNGLYAALYNSQFEELSE

Nucleotide


Download         Length: 1845 bp        

>NTDB_id=597696 K5P74_RS01315 WP_222226284.1 260111..261955(+) (rcrQ) [Enterococcus raffinosus strain CX012922]
ATGGCAGAACAAAAACAAAATCGCCCTCATGGTGGCGGACCTGGCCGGGGAATGGCTGCGCCAGTAGAAAAAGCCAAAGA
CTTCAAAGGAACAATCAAAAAATTAGTTTCCTATCTTGGCGCATATAAAATCGCAGTTTTTTTTGTAATGATCTTTGCAG
CAGCCTCAACGATTTTTAATATTTGGGGGCCAAAAATCTTATCAAAGGCGATTACTGAATTATTTAATGGCTTGATTAAG
AAATATCAAGGAACTGGCGATATCAACTTTGAAAAAATCGGTGGCATCCTCCTTTTCATGTTAGCTCTTTATGGAGTTGC
TTCCTTATTCGGAATCATCCAAGGCTGGATTATGTCGACGATTTCGCAAAAAATCACATATCGGATGCGGAAAGAAATTT
CTAAAAAAATCAATCGCATGCCGATGAACTATTTTGAAAGTCGGACGACAGGGGAAGTCCTTTCACGTATCACAAATGAT
GTGGATACCTTAGGACAATCCTTGAACCAAAGCTTAACTCAATTGATTACTTCAACCTTTACGATTGTTGGAGTTATTGT
TATGATGCTTTCGATTTCAGTGAAGATGACAGGGATTGCGATCTTAATCGTACCAATTTCTTTAATACTGATCTTAGTTG
TTGTGAAAAACTCACAAAAATACTTCAAAACCCAACAGGAATACCTTGGAGTTATCAATGGGAAGGTAGAAGAAACCATC
GGTGGGTATACAATCGTTCGTTTATTCAATGAAGAAGAAAACTCATTAAAAGAATTTAAAGAGCAAAATGATGTATTGTT
CAAATCAGCTTGGAAATCACAATTTCTTTCTGGATTGATGCAGCCCATTATGAACTTTGTCGGAAACTTAGGCTATGTCG
GTGTGGCGATCGCTGGTGGGGTTATGGCATACAACGGCTCAATCACAGTCGGAGATATCCAAGCGTTTATCCAATATGTA
CGTAACCTGACACAACCAATTGCTCAGCTTGCGCAAGTATCTAACATGCTTCAATCAATGGCGGCAGCGGCAGAACGCGT
CTTTGAATTCTTAGCAGAAGACGAAGAAGATCAACTGGCTGAAAACCCAGTTCAGATCGACAAAGCAGAAGGCATGGTGG
ACTTTGAACATGTTCAATTCGGTTACACACCGGATAAGATCGTTATCCAAGACTTTACTTCTCATGTTGATCCTGGTCAG
ACAGTCGCAATTGTTGGACCAACTGGTGCTGGTAAAACGACAATGGTTAAGTTGCTGATGCGCTTTTATGATGTAAATTC
TGGTGCAATCAAAATTGATGGTCATAACATCAAGGACTTCAATCGTGCAGATTTACGTAAAAATATCGGGATGGTTTTAC
AAGATACCTGGTTATTTAAAGGCACAATTATGGATAACCTTCGTTACGGTCGTTTAGATGCTACCGATGAAGAAGTTTAC
GCAGCGGCAAAAGCCGCTCACGTGGATCACTTCATCAAGACATTACCTGGCGGCTATAATATGGAATTAAACGAAGAGTC
TTCCAACATCTCGCAGGGGCAAAAACAATTGTTGACGATTGCTCGCGCGATTTTAGCAGATAAACCTATTCTAATTCTCG
ATGAGGCGACATCCTCTGTTGATACACGGACAGAAGGATTGATCCAAGAGGCTATGAATAACTTAATGAAGGGGCGTACC
TCTTTCGTTATTGCCCATCGTTTGTCAACAATCAAAGATGCGGATAAGATTCTCTATATGCAAGGCGGAGATATTAAGGA
ACAAGGAAGCCACGAAGAATTATTGGCTCAAAACGGGCTTTATGCCGCATTGTATAATTCGCAATTTGAAGAATTATCAG
AATAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(46-326)

ABC transporter (ABC_tran)

(391-538)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

50.943

94.951

0.484