Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   K5X77_RS03935 Genome accession   NZ_CP081833
Coordinates   826716..829154 (-) Length   812 a.a.
NCBI ID   WP_222318664.1    Uniprot ID   -
Organism   Vagococcus lutrae strain BN31     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 821716..834154
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5X77_RS03920 (K5X77_03920) - 823270..824556 (-) 1287 WP_222318626.1 YeeE/YedE family protein -
  K5X77_RS03925 (K5X77_03925) - 824742..825626 (+) 885 WP_126760644.1 LysR family transcriptional regulator -
  K5X77_RS03930 (K5X77_03930) - 825699..826649 (+) 951 WP_222318653.1 diacylglycerol kinase family protein -
  K5X77_RS03935 (K5X77_03935) recD2 826716..829154 (-) 2439 WP_222318664.1 ATP-dependent RecD-like DNA helicase Machinery gene
  K5X77_RS03940 (K5X77_03940) - 829169..830218 (-) 1050 WP_222318667.1 SepM family pheromone-processing serine protease -
  K5X77_RS03945 (K5X77_03945) coaD 830234..830737 (-) 504 WP_023606471.1 pantetheine-phosphate adenylyltransferase -
  K5X77_RS03950 (K5X77_03950) rsmD 830734..831294 (-) 561 WP_222318670.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  K5X77_RS03955 (K5X77_03955) - 831382..831666 (-) 285 WP_023606469.1 YlbG family protein -
  K5X77_RS03960 (K5X77_03960) - 831659..832087 (-) 429 WP_222318676.1 YlbF family regulator -
  K5X77_RS03965 (K5X77_03965) - 832089..833225 (-) 1137 WP_222318679.1 CAP-associated domain-containing protein -

Sequence

Protein


Download         Length: 812 a.a.        Molecular weight: 91274.07 Da        Isoelectric Point: 4.5286

>NTDB_id=597652 K5X77_RS03935 WP_222318664.1 826716..829154(-) (recD2) [Vagococcus lutrae strain BN31]
MVESEKDLHHTPKIIGRIQAIFYQNPTNFYKVMLIEVEESEPSIDELEMVVTGNFGDMMEGESYQFSGQFVTHPKYGRQF
QVERYEQVKPTSANGLIDYLSGDNFPGIGKKTAEKLVDYFGEETIDVIMNDSERLDALDFLNKKRRDTIISGVKSNYGSE
KILIQLNEWGFGSQLAMTIFQKYQEQTLTLLEENPYRLIEDIEGIAFKKADKLAEHLNIAANAPERFQAAILTELLSYSL
SEGHTYIEAQVLLEKVVTLLESSRRYAVELSDVADQIIALIDLGKMQQEGTKLFHNSLFYAEWGVSHAIHRLLKRKQSID
YDEATILASIKQMETELGIAYGPSQKTALIEGVQSSFFILTGGPGTGKTTVINGLVRLFSELNELSLDINDYHNEVFPIL
LAAPTGRAAKRMSETTGLPAKTIHRLLGLTGQEMHPEEIANELEGSLLILDEMSMVDTWLANALFKAIPTNMQVIIVGDK
DQLPSVGPGQVLHDLLSIPMLPQCELTDIYRQEDGSSIIALAHAIKEGTLPTDFTRNQKDRSFIAGNTYQIEEMIRQIVV
KAAEKGFTASDIQVLAPMYRGPAGIDRLNKMLQEVLNPNESGRRKEVTWFETVYRIGDKVLQLVNVPENQVYNGDIGEIT
GIILAKEHEDKVDVLVVDFDGIEVEYPRNQWQQLTLAYCCSIHKSQGSEYPLVILPMVNGYYRMLQRNLLYTAITRSQER
LILLGELEAYETAVKHEGANRQTALKERIMAEAFPSITSLDTQSQEESIPKEEIAQEQLETPASFILTKELILSGAVDPM
IGMEGITPFDYI

Nucleotide


Download         Length: 2439 bp        

>NTDB_id=597652 K5X77_RS03935 WP_222318664.1 826716..829154(-) (recD2) [Vagococcus lutrae strain BN31]
ATGGTAGAAAGTGAAAAAGATTTACATCATACGCCTAAAATAATAGGACGGATTCAAGCCATCTTTTATCAAAATCCTAC
TAATTTTTATAAAGTGATGTTGATTGAAGTGGAAGAAAGCGAGCCGTCAATTGATGAATTAGAAATGGTTGTAACAGGAA
ATTTTGGCGATATGATGGAAGGAGAAAGCTACCAGTTTTCTGGACAGTTTGTCACACATCCTAAGTATGGCCGTCAATTC
CAAGTGGAACGTTATGAACAGGTAAAACCAACCAGTGCTAATGGTTTAATTGACTATTTGTCTGGGGATAACTTTCCCGG
AATTGGAAAAAAAACAGCTGAAAAATTAGTAGATTATTTTGGCGAAGAAACAATCGATGTCATTATGAATGATTCTGAAA
GATTAGACGCGTTAGATTTTTTAAATAAAAAACGAAGAGATACGATTATATCGGGAGTTAAAAGTAATTACGGGTCAGAA
AAAATCCTTATTCAACTGAATGAATGGGGATTTGGTAGTCAATTAGCTATGACTATCTTTCAAAAGTATCAGGAACAAAC
ATTAACCCTCTTAGAAGAGAATCCTTATCGCTTGATTGAAGATATTGAAGGGATTGCGTTTAAAAAAGCTGATAAGTTAG
CAGAACATTTAAATATTGCCGCGAATGCACCAGAGCGTTTTCAAGCGGCTATTTTAACAGAGCTGCTGTCATACTCATTA
AGTGAAGGACATACGTATATTGAAGCACAAGTTTTATTAGAGAAAGTCGTAACGCTGTTAGAATCATCACGACGTTATGC
GGTGGAGCTTAGTGACGTAGCCGATCAAATCATTGCGTTGATTGATTTAGGAAAGATGCAGCAAGAAGGAACAAAGCTCT
TTCATAACAGTTTATTCTATGCAGAATGGGGCGTTTCACATGCCATTCATCGCTTACTTAAACGTAAACAATCAATTGAT
TATGATGAAGCAACTATTTTAGCATCTATTAAGCAGATGGAGACGGAATTAGGCATTGCTTATGGCCCTTCGCAAAAGAC
AGCTTTGATTGAAGGCGTTCAGTCTTCTTTCTTTATTTTGACAGGTGGTCCTGGTACAGGGAAAACGACGGTCATTAATG
GCCTCGTCAGATTATTCTCAGAGCTTAATGAGCTTTCTTTAGATATCAATGATTATCATAATGAGGTCTTTCCTATCTTA
TTAGCAGCGCCGACTGGTCGGGCAGCAAAGCGAATGAGTGAAACGACTGGATTACCAGCGAAGACGATACATCGTTTGCT
AGGATTAACTGGACAAGAAATGCATCCAGAAGAAATTGCAAATGAATTAGAAGGTAGTTTGCTGATTTTAGATGAAATGT
CGATGGTCGATACGTGGTTGGCAAATGCACTATTTAAAGCGATACCTACCAATATGCAAGTGATTATAGTTGGAGATAAA
GACCAGCTGCCATCTGTTGGGCCCGGTCAGGTTTTACACGATTTACTATCGATTCCCATGCTACCTCAATGTGAGTTAAC
AGATATTTATCGACAAGAAGATGGTTCGTCAATTATTGCTTTAGCACATGCGATTAAAGAAGGGACGTTGCCTACTGATT
TTACTCGTAATCAGAAAGACCGTTCTTTTATTGCAGGCAACACGTATCAAATAGAAGAAATGATTCGTCAAATTGTGGTC
AAAGCTGCAGAAAAAGGTTTTACAGCTTCCGATATACAAGTTTTAGCACCGATGTATCGCGGACCAGCTGGCATTGACCG
ATTGAATAAAATGTTACAAGAAGTGTTAAATCCTAATGAAAGTGGTCGTCGTAAAGAAGTAACGTGGTTTGAAACTGTTT
ATCGAATTGGTGATAAGGTTCTTCAACTGGTTAATGTTCCGGAAAATCAAGTTTATAATGGCGATATTGGAGAAATTACT
GGTATCATCTTAGCGAAAGAGCACGAAGATAAAGTGGATGTCTTGGTAGTCGATTTTGATGGAATAGAAGTGGAATATCC
ACGTAATCAGTGGCAGCAACTCACGCTTGCCTATTGCTGTTCTATTCATAAGTCACAAGGGAGTGAATACCCGCTTGTGA
TTTTGCCAATGGTTAATGGTTATTATCGAATGTTACAGCGTAATTTATTGTATACGGCGATTACGCGTAGTCAAGAGCGT
TTGATTTTATTGGGCGAACTGGAAGCTTATGAAACAGCTGTCAAGCATGAAGGTGCTAATCGTCAAACTGCTTTGAAAGA
ACGGATTATGGCAGAAGCATTTCCGAGTATAACGTCACTTGATACCCAATCTCAAGAAGAAAGTATTCCTAAAGAAGAAA
TAGCTCAAGAACAACTTGAAACGCCAGCGTCATTTATCTTAACAAAAGAGTTAATTCTTTCTGGTGCCGTTGACCCTATG
ATTGGAATGGAAGGTATTACACCGTTTGATTACATTTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(156-246)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(588-659)

AAA domain (AAA_30)

(342-544)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(677-724)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

49.506

99.754

0.494