Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   K5J94_RS05930 Genome accession   NZ_CP081502
Coordinates   1231317..1232186 (+) Length   289 a.a.
NCBI ID   WP_221912618.1    Uniprot ID   -
Organism   Streptococcus halichoeri strain Shali_VAS-CPH     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1226317..1237186
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5J94_RS05900 - 1226614..1227489 (+) 876 WP_159544185.1 F0F1 ATP synthase subunit gamma -
  K5J94_RS05905 atpD 1227619..1229025 (+) 1407 WP_159544183.1 F0F1 ATP synthase subunit beta -
  K5J94_RS05910 - 1229038..1229454 (+) 417 WP_159544181.1 F0F1 ATP synthase subunit epsilon -
  K5J94_RS05915 - 1229521..1229745 (+) 225 WP_159544179.1 DUF1146 family protein -
  K5J94_RS05920 murA 1229823..1231094 (+) 1272 WP_159544177.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  K5J94_RS05925 - 1231098..1231286 (+) 189 WP_159544175.1 DNA-directed RNA polymerase subunit beta -
  K5J94_RS05930 endA 1231317..1232186 (+) 870 WP_221912618.1 DNA/RNA non-specific endonuclease Machinery gene
  K5J94_RS05935 pheS 1232521..1233564 (+) 1044 WP_221912619.1 phenylalanine--tRNA ligase subunit alpha -
  K5J94_RS05940 pheT 1233612..1236017 (+) 2406 WP_221912620.1 phenylalanine--tRNA ligase subunit beta -
  K5J94_RS05945 - 1236218..1236805 (+) 588 WP_159564046.1 DNA-3-methyladenine glycosylase -

Sequence

Protein


Download         Length: 289 a.a.        Molecular weight: 31949.17 Da        Isoelectric Point: 10.1623

>NTDB_id=597071 K5J94_RS05930 WP_221912618.1 1231317..1232186(+) (endA) [Streptococcus halichoeri strain Shali_VAS-CPH]
MSKKPFHPKQINLLLVILVMLCFGYLALSGQKDQEELFTNLYHQLVKQPLPGASFGDSANPARPSKALASSVLTPQVRKQ
LGSAITWNGAGAFIINQNRTNLDASVRSKVYAVNQTKHVQGRLVPTQGNALLSKQTRQYQNRQKLGQGYTTFQPAGWHQL
HHLPGTYDHAVDRGHVLAYALVGGLKGFDASTSNPQNIATQLAWANQANAADSTGQNYYESLVRRALDQHHRVRYRVTLI
YQGEELLARGSHIEAKAADGSLEFNVFVPNVQKGLEVDYYSGQISLSKK

Nucleotide


Download         Length: 870 bp        

>NTDB_id=597071 K5J94_RS05930 WP_221912618.1 1231317..1232186(+) (endA) [Streptococcus halichoeri strain Shali_VAS-CPH]
ATGTCAAAAAAACCTTTTCACCCAAAGCAGATTAATCTGCTATTAGTGATTTTAGTAATGCTTTGCTTTGGCTATTTAGC
TCTAAGTGGCCAAAAAGATCAAGAAGAGCTTTTTACAAATCTTTACCATCAGTTGGTTAAGCAGCCCTTGCCTGGTGCAT
CTTTTGGTGATTCAGCTAATCCAGCTCGCCCTTCAAAAGCTTTAGCAAGTTCGGTCTTAACCCCGCAGGTACGAAAACAA
CTGGGCTCTGCTATTACTTGGAATGGCGCAGGAGCCTTTATTATCAATCAAAACCGGACTAATCTAGATGCTAGTGTGCG
TAGTAAGGTCTATGCTGTTAACCAGACAAAACACGTACAAGGTCGCCTCGTTCCAACACAAGGCAATGCCCTTTTAAGCA
AACAGACGCGCCAATACCAAAATCGTCAGAAACTCGGCCAGGGCTATACCACCTTTCAGCCAGCAGGGTGGCACCAATTG
CACCATTTACCTGGGACCTACGACCATGCTGTTGATCGGGGTCATGTCTTGGCTTATGCCTTGGTTGGTGGTCTAAAAGG
CTTTGATGCCTCAACCAGTAATCCCCAAAACATCGCCACACAGCTTGCTTGGGCTAATCAAGCAAACGCCGCTGATTCGA
CGGGACAAAACTACTATGAATCACTCGTTCGTCGAGCTTTGGACCAGCATCACCGGGTGCGTTATAGAGTAACACTGATT
TATCAGGGGGAAGAATTGCTGGCGCGCGGCAGCCATATTGAAGCCAAAGCTGCCGATGGCTCGTTAGAATTTAACGTCTT
TGTCCCTAATGTGCAAAAAGGCCTAGAGGTTGATTACTATAGTGGCCAGATTAGCCTCAGCAAAAAGTAG

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(91-246)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

63.274

78.201

0.495
  endA Streptococcus pneumoniae D39

63.274

78.201

0.495
  endA Streptococcus pneumoniae R6

63.274

78.201

0.495
  endA Streptococcus pneumoniae TIGR4

63.274

78.201

0.495