Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   NAG75_RS16005 Genome accession   NZ_CP097873
Coordinates   3205799..3206524 (+) Length   241 a.a.
NCBI ID   WP_017449060.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain GL-601     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3200799..3211524
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NAG75_RS15990 - 3201902..3204223 (+) 2322 WP_264402498.1 Tex family protein -
  NAG75_RS15995 - 3204359..3204823 (-) 465 WP_005459035.1 hypothetical protein -
  NAG75_RS16000 bioH 3204947..3205714 (-) 768 WP_029785475.1 pimeloyl-ACP methyl ester esterase BioH -
  NAG75_RS16005 comF 3205799..3206524 (+) 726 WP_017449060.1 amidophosphoribosyltransferase Machinery gene
  NAG75_RS16010 nfuA 3206622..3207206 (+) 585 WP_005458964.1 Fe-S biogenesis protein NfuA -
  NAG75_RS16015 nudE 3207427..3207996 (+) 570 WP_005459019.1 ADP compounds hydrolase NudE -
  NAG75_RS16020 cysQ 3208037..3208864 (+) 828 WP_017449059.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  NAG75_RS16025 - 3209150..3209911 (-) 762 WP_005496730.1 type II secretion system protein N -
  NAG75_RS16030 - 3209913..3210404 (-) 492 WP_005458943.1 type II secretion system protein M -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27725.91 Da        Isoelectric Point: 8.9991

>NTDB_id=596825 NAG75_RS16005 WP_017449060.1 3205799..3206524(+) (comF) [Vibrio parahaemolyticus strain GL-601]
MLSHHWQNIMHRVLSSQCGLCRFPILAAAQPNALRWCDHCYQYLTPVKRCQRCGLSLKAEEANIESICGECLSEPPPWQR
LFTLGDYDFPLSREVQRFKDHGQTWHVRALTQLLAQRISTPAPLITTVPLHWQRYFYRGFNQSDILARHLAGHLNVRFDN
HVFRRVKHVQSQRGYKKSSREQNLKGAFTLNQPPKYNHVAIVDDVVTTGSTVRQLCHLLLEVGVETVDIYCICRTPAPGA
V

Nucleotide


Download         Length: 726 bp        

>NTDB_id=596825 NAG75_RS16005 WP_017449060.1 3205799..3206524(+) (comF) [Vibrio parahaemolyticus strain GL-601]
ATGTTATCTCATCACTGGCAAAACATCATGCATCGTGTGCTCAGCAGTCAATGCGGTTTATGTCGCTTCCCGATTCTGGC
TGCCGCTCAACCCAATGCGCTGCGTTGGTGTGATCACTGTTATCAATATCTTACGCCAGTAAAACGCTGCCAACGTTGTG
GATTGAGCTTAAAAGCAGAGGAAGCGAATATAGAGAGTATTTGCGGCGAGTGCCTCTCCGAGCCTCCCCCTTGGCAACGG
CTATTTACCTTGGGAGACTACGATTTTCCGCTGTCTCGAGAAGTACAACGCTTCAAAGATCACGGACAAACATGGCATGT
TCGCGCTTTAACGCAATTGCTTGCCCAGCGCATTTCAACTCCCGCTCCGCTTATCACAACAGTGCCATTGCACTGGCAAC
GCTACTTTTATCGAGGCTTTAATCAGAGCGACATACTGGCGCGACATTTGGCTGGTCACCTTAATGTGAGGTTTGATAAT
CACGTGTTTCGCCGCGTAAAACACGTCCAGTCGCAGCGTGGGTACAAGAAATCCAGCCGAGAACAGAATTTAAAAGGCGC
TTTCACCTTAAATCAGCCACCAAAGTATAACCACGTCGCAATCGTAGATGATGTGGTCACGACGGGAAGCACGGTTCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAACCGTCGATATTTACTGCATCTGCAGAACCCCTGCTCCTGGTGCT
GTCTAG

Domains

Predicted by InterProScan.

Phosphoribosyl transferase domain (Pribosyltran)

(146-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

72.199

100

0.722
  comF Vibrio cholerae strain A1552

49.16

98.755

0.485