Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   M9H69_RS08155 Genome accession   NZ_CP097843
Coordinates   1592790..1595156 (+) Length   788 a.a.
NCBI ID   WP_250315345.1    Uniprot ID   -
Organism   Streptococcus oralis strain HP01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1587790..1600156
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M9H69_RS08135 (M9H69_08135) - 1590228..1590776 (-) 549 WP_000623538.1 CvpA family protein -
  M9H69_RS08140 (M9H69_08140) zapA 1590773..1591075 (-) 303 WP_000002028.1 cell division protein ZapA -
  M9H69_RS08145 (M9H69_08145) rnhC 1591162..1592043 (+) 882 WP_250315344.1 ribonuclease HIII -
  M9H69_RS08150 (M9H69_08150) lepB 1592047..1592661 (+) 615 WP_001083990.1 signal peptidase I -
  M9H69_RS08155 (M9H69_08155) recD/recD2/recDB 1592790..1595156 (+) 2367 WP_250315345.1 ATP-dependent RecD-like DNA helicase Machinery gene
  M9H69_RS08160 (M9H69_08160) tig 1595205..1596488 (-) 1284 WP_250315346.1 trigger factor -
  M9H69_RS08165 (M9H69_08165) - 1596579..1597235 (-) 657 WP_250315347.1 DNA alkylation repair protein -
  M9H69_RS08170 (M9H69_08170) vraR 1597236..1597868 (-) 633 WP_250315348.1 response regulator transcription factor Regulator
  M9H69_RS08175 (M9H69_08175) - 1597882..1598877 (-) 996 WP_250315349.1 sensor histidine kinase -
  M9H69_RS08180 (M9H69_08180) liaF 1598874..1599572 (-) 699 WP_009729816.1 cell wall-active antibiotics response protein LiaF -

Sequence

Protein


Download         Length: 788 a.a.        Molecular weight: 88342.06 Da        Isoelectric Point: 4.5166

>NTDB_id=596636 M9H69_RS08155 WP_250315345.1 1592790..1595156(+) (recD/recD2/recDB) [Streptococcus oralis strain HP01]
MEVYFSGTIERIIFENPSNFYRILLLDIEDTNAEDFDDFEIIVTGTMADVIEGEDYTFWGQIVQHSKYGEQLQISRYERA
KPTRKGLVKYFSSSHFKGIGLKTAQKIVDSYGDNTIDEILEHPEKLESIAGLSVKNREAFVSTLRLNYGTEMVLAKLANY
GIPNKLAFQIQDFYKEETLDVVENYPYQLVEDIKGLGFTIADQLAAELGIESQAPERFRAGLVHSLFQGCMDTGDTYMEA
RDLLEQTLTLLESSRPVELDPSQVAQELSHLIEEDKVQQIDTKIFDNSLFFAEEGIRNNLVRILEKGKQKSHDLEAIQKH
IASVEEELGIQYDSIQKQAICDAIQNKVFILTGGPGTGKTTVINGIIAVYALLEGLDLRKKSNLPILLAAPTGRAARRMN
ELTGLPSATIHRHLGMTGDDDTSHLEDYLDADFIIVDEFSMVDTWLANQLFSNISSNSKILIVGDSDQLPSVSPGQVLAD
LLQIQLIPQTRLERIYRQSEESTIVTLASQIRQGILPADFTQKKADRSYFEIASGHIPATIEKILGAALRSSISARDIQV
LAPMYRGTAGIDAINQLMQDLLNPLQKGQVSFEATQCHYRTGDKVIHLVNDAEVNVFNGDLGYITDLIPGKYTESKQDEI
VIDFDGNEVIYPRNEWYKIRLAYAMSIHKSQGSEFPVVILPITSSSKRMLERNLIYTAITRAKSKLILLGELQAFDYAVN
HIGTARKTYLIERFADLMENAEETNQLATDTATSTETEQSYILTEENWSSIPAMIGITDADLKEIFGK

Nucleotide


Download         Length: 2367 bp        

>NTDB_id=596636 M9H69_RS08155 WP_250315345.1 1592790..1595156(+) (recD/recD2/recDB) [Streptococcus oralis strain HP01]
ATGGAAGTTTATTTTTCAGGCACCATTGAACGCATTATTTTTGAAAATCCCAGTAATTTTTATCGTATTCTCCTCCTAGA
TATCGAAGATACCAATGCGGAGGACTTCGATGATTTTGAAATCATCGTTACAGGAACCATGGCGGACGTGATTGAAGGGG
AAGACTACACTTTTTGGGGGCAAATCGTTCAGCACTCCAAGTATGGGGAACAGCTTCAGATCAGCCGTTATGAACGGGCA
AAACCAACTAGAAAAGGGCTAGTCAAATATTTTTCCAGTAGCCATTTCAAGGGAATTGGCCTCAAAACTGCTCAGAAAAT
CGTCGATAGCTATGGTGACAATACCATTGACGAAATTCTGGAACATCCTGAAAAGCTAGAAAGTATTGCAGGACTCTCTG
TCAAAAACCGTGAGGCTTTTGTTTCCACCCTCCGTCTCAACTATGGGACAGAAATGGTTTTGGCTAAACTTGCCAACTAC
GGCATTCCCAATAAACTAGCCTTTCAGATTCAAGACTTTTACAAGGAAGAAACTCTTGATGTGGTTGAAAATTATCCCTA
TCAACTGGTTGAGGATATCAAGGGTTTGGGCTTTACCATTGCTGACCAATTAGCTGCCGAACTAGGCATCGAAAGTCAAG
CTCCTGAGCGCTTCCGCGCTGGCCTTGTCCACAGTCTCTTTCAAGGCTGTATGGATACGGGCGATACCTATATGGAAGCC
CGAGATTTGCTGGAACAAACCCTGACTCTCCTAGAGTCTTCCCGTCCCGTGGAACTCGATCCCAGCCAAGTTGCTCAGGA
ATTATCTCATCTGATCGAAGAAGATAAGGTTCAGCAGATTGATACCAAAATCTTTGATAACAGCCTCTTTTTCGCCGAAG
AAGGCATCCGCAATAACTTGGTTCGTATCCTCGAAAAAGGAAAGCAAAAGAGTCATGATTTGGAAGCCATTCAAAAGCAT
ATCGCTAGTGTTGAGGAAGAACTGGGTATCCAATACGATAGCATCCAAAAGCAGGCTATCTGCGACGCCATCCAGAACAA
GGTCTTTATCCTGACAGGTGGACCTGGTACTGGTAAGACGACTGTTATCAATGGGATTATCGCTGTTTATGCCCTCTTAG
AAGGACTCGATCTCAGAAAAAAAAGCAACTTACCTATTCTTCTCGCTGCACCAACTGGTCGAGCGGCTCGGCGCATGAAT
GAATTGACAGGTTTGCCAAGTGCTACCATCCACCGCCATTTGGGAATGACGGGTGATGATGATACCAGCCATCTGGAAGA
TTATCTGGATGCCGACTTCATCATCGTGGATGAGTTTTCTATGGTGGACACTTGGCTAGCTAACCAACTCTTCTCCAATA
TCTCCTCAAATAGTAAAATTCTCATCGTGGGTGATAGCGACCAGTTACCTTCTGTCAGTCCTGGACAAGTCTTAGCTGAC
CTACTCCAGATTCAACTGATTCCGCAGACTCGCTTGGAACGGATTTACCGTCAGAGCGAAGAATCAACTATCGTTACCTT
GGCAAGTCAGATTCGACAAGGCATCTTGCCAGCCGACTTTACCCAGAAAAAAGCAGACCGTTCCTACTTTGAAATCGCTA
GTGGCCATATCCCCGCTACCATTGAGAAAATCCTCGGTGCCGCCCTCAGAAGTAGCATTTCAGCTCGTGATATTCAGGTG
CTGGCGCCTATGTATCGAGGAACTGCTGGTATTGACGCCATCAACCAACTCATGCAAGACCTGCTCAATCCTCTTCAAAA
GGGGCAAGTTAGCTTTGAAGCAACTCAGTGTCACTATCGAACAGGGGACAAGGTCATTCACCTAGTCAACGACGCCGAAG
TCAATGTCTTTAACGGAGACCTAGGCTACATCACAGATTTGATTCCTGGAAAATACACCGAGTCCAAACAAGACGAGATT
GTCATTGATTTTGATGGCAATGAGGTCATCTATCCTCGAAACGAATGGTACAAGATTCGTCTGGCCTATGCCATGAGTAT
TCATAAGTCGCAGGGAAGTGAGTTTCCCGTTGTCATCCTTCCCATCACCAGTTCCAGCAAGCGCATGCTGGAGCGCAATC
TCATCTACACAGCTATCACACGGGCCAAGAGCAAACTCATCCTTCTTGGCGAATTACAGGCCTTTGACTATGCAGTTAAC
CATATCGGAACTGCCCGCAAGACCTATCTGATTGAACGTTTCGCTGACTTGATGGAAAACGCCGAGGAAACCAACCAACT
TGCAACCGATACTGCTACCTCAACAGAAACTGAACAATCCTACATCCTAACTGAGGAAAACTGGTCTAGCATCCCAGCCA
TGATTGGGATTACAGACGCAGACTTAAAAGAGATTTTTGGAAAATAG

Domains

Predicted by InterProScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(148-237)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(662-709)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(574-644)

AAA domain (AAA_30)

(332-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

42.112

94.924

0.4