Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   M9H69_RS07260 Genome accession   NZ_CP097843
Coordinates   1412492..1413280 (-) Length   262 a.a.
NCBI ID   WP_000940727.1    Uniprot ID   A0A426FW22
Organism   Streptococcus oralis strain HP01     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1407492..1418280
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M9H69_RS07235 (M9H69_07235) vex2 1408692..1409339 (-) 648 WP_000173735.1 ABC transporter ATP-binding subunit Vex2 -
  M9H69_RS07240 (M9H69_07240) - 1409457..1410734 (-) 1278 WP_250315236.1 ABC transporter permease -
  M9H69_RS07245 (M9H69_07245) - 1410869..1411480 (-) 612 WP_250315237.1 CPBP family intramembrane glutamic endopeptidase -
  M9H69_RS07255 (M9H69_07255) - 1411917..1412492 (-) 576 WP_250315238.1 isochorismatase family cysteine hydrolase -
  M9H69_RS07260 (M9H69_07260) codY 1412492..1413280 (-) 789 WP_000940727.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  M9H69_RS07265 (M9H69_07265) - 1413563..1415140 (-) 1578 WP_250315239.1 DEAD/DEAH box helicase -
  M9H69_RS07270 (M9H69_07270) - 1415490..1416806 (+) 1317 WP_250315240.1 FAD-containing oxidoreductase -
  M9H69_RS07275 (M9H69_07275) - 1416971..1418176 (+) 1206 WP_250315241.1 hypothetical protein -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 29671.03 Da        Isoelectric Point: 5.0834

>NTDB_id=596624 M9H69_RS07260 WP_000940727.1 1412492..1413280(-) (codY) [Streptococcus oralis strain HP01]
MAHLLEKTRKITSILKRSEEQLQDELPYNAITRQLADIIDCNACIVNSKGRLLGYFMRYKTNTDRVEQFFQTKIFPDDYI
QGANMIYDTEANLPVEHDLTIFPVESRADFPDGLTTIAPIHVSGIRLGSLIIWRNDKKFEDEDLILVEIASTVVGIQLLN
FQREEDEKNIRRRTAVTMAVNTLSYSELRAVSAILAELDGNEGQLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVLIGDIFEEVKKRDY

Nucleotide


Download         Length: 789 bp        

>NTDB_id=596624 M9H69_RS07260 WP_000940727.1 1412492..1413280(-) (codY) [Streptococcus oralis strain HP01]
ATGGCACACTTATTAGAAAAAACAAGAAAAATTACTTCTATTTTGAAACGCTCAGAGGAGCAACTTCAAGATGAACTTCC
TTACAATGCGATTACACGCCAGTTGGCAGATATTATTGATTGTAACGCTTGTATTGTGAATAGCAAGGGACGCCTTTTAG
GCTACTTCATGCGTTATAAAACGAATACAGATCGTGTAGAGCAGTTTTTTCAAACTAAGATTTTTCCAGATGATTATATT
CAAGGTGCAAACATGATCTATGATACGGAAGCCAACCTTCCTGTTGAACATGATTTGACCATTTTCCCTGTAGAAAGCCG
TGCGGATTTTCCAGATGGTTTGACGACCATTGCTCCGATTCATGTGTCAGGGATTCGCCTAGGTTCGTTGATTATTTGGC
GCAATGATAAGAAGTTTGAAGATGAAGATTTGATTCTTGTCGAGATTGCGAGCACGGTTGTGGGAATTCAACTATTGAAC
TTCCAACGCGAAGAAGACGAGAAAAATATTCGCCGTCGTACTGCTGTTACCATGGCGGTTAATACCCTTTCCTATTCAGA
ACTTCGTGCCGTATCAGCTATTTTAGCTGAATTGGATGGAAATGAAGGGCAGCTGACTGCATCAGTTATTGCAGATCGTA
TTGGCATTACGCGCTCAGTGATTGTCAATGCGCTTCGTAAATTGGAGTCGGCTGGAATTATTGAGAGCCGTTCACTCGGA
ATGAAGGGGACTTATCTCAAAGTTCTAATTGGTGATATTTTTGAGGAAGTGAAAAAGAGGGACTACTAA

Domains

Predicted by InterProScan.

CodY helix-turn-helix domain (HTH_CodY)

(202-258)

CodY GAF-like domain (CodY)

(3-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A426FW22

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

62.977

100

0.63
  codY Bacillus subtilis subsp. subtilis str. 168

49.593

93.893

0.466