Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   K5L00_RS03335 Genome accession   NZ_CP081459
Coordinates   653158..654933 (-) Length   591 a.a.
NCBI ID   WP_227276638.1    Uniprot ID   -
Organism   Vagococcus fluvialis strain 110B2     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 648158..659933
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5L00_RS03310 (K5L00_03295) - 648526..649428 (+) 903 WP_114290094.1 NAD-dependent epimerase/dehydratase family protein -
  K5L00_RS03315 (K5L00_03300) - 649445..649891 (-) 447 WP_114290095.1 MerR family transcriptional regulator -
  K5L00_RS03320 (K5L00_03305) - 649994..650974 (+) 981 WP_227276637.1 aldo/keto reductase -
  K5L00_RS03325 (K5L00_03310) - 651144..651602 (+) 459 WP_114290097.1 MarR family winged helix-turn-helix transcriptional regulator -
  K5L00_RS03330 (K5L00_03315) - 651580..652980 (+) 1401 WP_114290098.1 DHA2 family efflux MFS transporter permease subunit -
  K5L00_RS03335 (K5L00_03320) rcrQ 653158..654933 (-) 1776 WP_227276638.1 ABC transporter ATP-binding protein Regulator
  K5L00_RS03340 (K5L00_03325) rcrP 654933..656690 (-) 1758 WP_227276639.1 ABC transporter ATP-binding protein Regulator
  K5L00_RS03345 - 656791..656871 (+) 81 Protein_628 DUF3788 domain-containing protein -
  K5L00_RS03350 (K5L00_03330) - 656925..657965 (-) 1041 WP_114290101.1 HAMP domain-containing sensor histidine kinase -
  K5L00_RS03355 (K5L00_03335) - 657962..658636 (-) 675 WP_227276640.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 591 a.a.        Molecular weight: 65845.86 Da        Isoelectric Point: 5.7421

>NTDB_id=596549 K5L00_RS03335 WP_227276638.1 653158..654933(-) (rcrQ) [Vagococcus fluvialis strain 110B2]
MTKEKSKKKNNFSGNWKKLIAYSKRYMPIIIIALIASMIGSVLTLIGPDKLSEITDLITQGIMTGIDLDEVKRIGILLVF
FYGFGSLLSIIQGFIMASVTQIISRNLREDISKKINRLPLAYFNRNSTGDVLSRVTNDVDTIGQTLNQSIGTLVSAITLL
FGSLFMMLKTNVTLTATAVGATIIGFVLMSLIMSKSQKYFSQQQNDLGRINSHVEEIYTGQSVVKIYNAEESNKKVFDEM
NESLKTSGFKAQCLSGLMMPIMQFIGNFGYVAVCIVGAVLANNGTISFGVIVAFILYVRYFTQPLSQIAQSFQSLQSTSA
ASKRVFEFLGEEEMSDESHKEDTLDKATGEVRFNHVSFGYTPEKKVIKDFSAEVKPGQKIAIVGPTGAGKTTLINLLMRF
YEVDSGDIKIDGIKTKDLPRHVVNNQFSMILQDTWLFEGTIKENIVYNMTGITEEEIQKACESVGIHHFIETLPEKYDTI
LNDQLSLSSGQKQQLTIARAIVDNKPMLILDEATSSVDTRTELQIQSSMDQLMENRTSFIIAHRLSTIRNADVILVMKDG
DIIEQGNHDDLIAQNGFYSELYNSQFEEKIA

Nucleotide


Download         Length: 1776 bp        

>NTDB_id=596549 K5L00_RS03335 WP_227276638.1 653158..654933(-) (rcrQ) [Vagococcus fluvialis strain 110B2]
ATGACTAAAGAAAAATCAAAAAAGAAAAATAACTTTAGTGGTAATTGGAAAAAACTAATTGCCTACTCTAAAAGATATAT
GCCTATTATTATCATTGCGCTAATTGCCTCTATGATTGGTTCTGTTCTAACTTTAATTGGGCCAGACAAATTATCAGAAA
TTACAGATTTAATCACTCAAGGAATTATGACTGGTATTGATTTAGATGAAGTCAAAAGAATTGGTATCCTGCTAGTCTTT
TTCTATGGATTTGGATCTCTTCTTTCAATCATTCAAGGTTTTATTATGGCTAGCGTGACACAAATTATCTCTCGTAATTT
AAGAGAAGATATTTCGAAAAAAATCAATCGATTACCTCTAGCTTATTTTAATAGAAATTCTACTGGAGATGTTTTATCTC
GTGTAACAAATGATGTTGACACAATTGGCCAAACTCTAAACCAAAGCATCGGAACTTTAGTTTCTGCCATTACGTTACTA
TTTGGTTCTCTATTTATGATGTTAAAAACTAACGTCACACTAACTGCTACAGCTGTTGGAGCTACTATTATTGGATTTGT
TTTAATGAGTTTAATTATGAGTAAATCTCAAAAATACTTCTCACAACAACAAAATGATTTAGGACGCATTAACAGTCACG
TTGAAGAAATTTATACAGGTCAATCAGTGGTTAAAATTTATAATGCTGAAGAATCTAATAAAAAAGTTTTTGATGAGATG
AATGAAAGTCTAAAAACAAGTGGTTTTAAAGCACAATGTTTATCTGGATTAATGATGCCAATTATGCAATTTATAGGAAA
TTTTGGTTATGTTGCTGTTTGTATTGTAGGGGCTGTTCTAGCCAATAACGGAACAATTAGTTTTGGTGTCATTGTAGCTT
TCATCCTTTATGTACGCTACTTTACTCAACCACTTAGTCAAATTGCTCAATCATTCCAATCATTACAGTCTACTTCTGCT
GCAAGTAAACGTGTTTTTGAATTTTTAGGCGAAGAAGAAATGTCTGATGAATCTCATAAAGAAGATACATTAGATAAAGC
AACCGGTGAAGTCAGATTTAATCATGTCAGTTTTGGCTATACTCCTGAGAAAAAAGTAATAAAAGATTTTTCTGCCGAAG
TAAAACCTGGACAAAAAATTGCTATTGTTGGGCCAACTGGTGCTGGTAAAACAACTTTAATTAATTTATTAATGAGATTT
TACGAAGTAGATAGTGGGGATATTAAAATTGATGGTATTAAAACAAAAGACTTACCACGTCATGTTGTAAACAATCAATT
TAGTATGATTCTTCAAGATACATGGTTATTTGAAGGAACCATTAAAGAAAATATTGTTTATAATATGACTGGTATTACAG
AGGAAGAAATTCAAAAAGCCTGTGAATCTGTCGGTATTCACCACTTCATTGAAACGCTACCTGAAAAATACGATACTATT
TTAAATGACCAATTAAGCCTATCATCTGGTCAAAAACAGCAGCTAACAATTGCCCGAGCAATTGTTGACAACAAACCTAT
GTTAATTCTTGATGAAGCAACAAGTTCAGTTGATACAAGAACAGAGTTACAAATTCAATCTTCAATGGATCAATTAATGG
AAAATAGAACATCCTTCATTATTGCTCACCGTTTATCTACTATTAGAAACGCTGATGTGATTTTAGTTATGAAAGATGGC
GATATTATTGAACAAGGAAATCACGATGATTTAATTGCTCAAAATGGTTTCTATTCAGAACTTTATAATAGCCAATTTGA
AGAAAAAATAGCTTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(30-305)

ABC transporter (ABC_tran)

(368-515)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

56.559

99.323

0.562